N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 6

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
43871	Nbe.v1.1.chr06g35520	Nbe.v1.1.chr06g35520.1	Nbe.v1.s00020g35520	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:24188375-24193142	+	Niben101Scf03224g07001.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
7865	Nbe.v1.1.chr09g38590	Nbe.v1.1.chr09g38590.1	Nbe.v1.s00040g38590	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:17215197-17217555	+	Niben101Scf06190g02007.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
3886	Nbe.v1.1.chr08g38840	Nbe.v1.1.chr08g38840.1	Nbe.v1.s00080g38840	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:139907794-139912553	+	Niben101Scf03224g07001.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
44739	Nbe.v1.1.chr07g01260	Nbe.v1.1.chr07g01260.1	Nbe.v1.s00100g01260	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr07:139002200-139006735	-	Niben101Scf02474g01021.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
39692	Nbe.v1.1.chr03g37870	Nbe.v1.1.chr03g37870.1	Nbe.v1.s00150g37870	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr03:118830723-118835451	-	Niben101Scf02474g01021.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
57562	Nbe.v1.1.chr16g32310	Nbe.v1.1.chr16g32310.1	Nbe.v1.s00200g00900	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr16:2132020-2140662	-	Niben101Scf02562g04001.1	AT1G15690.1	Inorganic H pyrophosphatase family protein	Inorganic H pyrophosphatase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries