N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 8

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
43751	Nbe.v1.1.chr06g34320	Nbe.v1.1.chr06g34320.1	Nbe.v1.s00020g34320	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:29385462-29385671	-		AT1G49940.1	hypothetical protein	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
43752	Nbe.v1.1.chr06g34330	Nbe.v1.1.chr06g34330.1	Nbe.v1.s00020g34330	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:29339733-29339942	-		AT1G06310.1	acyl-CoA oxidase 6	acyl-CoA oxidase 6	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
82651	Nbe.v1.1.chr10g28890	Nbe.v1.1.chr10g28890.1	Nbe.v1.s00050g28890	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr10:97021641-97022003	+		AT4G34380.1	Transducin/WD40 repeat-like superfamily protein	Transducin/WD40 repeat-like superfamily protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
20171	Nbe.v1.1.chr19g33170	Nbe.v1.1.chr19g33170.1	Nbe.v1.s00060g33170	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr19:32568695-32579552	+	Niben101Scf00176g00005.1	AT1G11430.1	plastid developmental protein DAG	plastid developmental protein DAG, putative	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
3505	Nbe.v1.1.chr08g35020	Nbe.v1.1.chr08g35020.1	Nbe.v1.s00080g35020	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:127102210-127102509	+		AT1G49940.1	hypothetical protein	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
75722	Nbe.v1.1.chr02g04000	Nbe.v1.1.chr02g04000.1	Nbe.v1.s00090g04000	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr02:134909566-134910270	-		AT4G21065.2	Tetratricopeptide repeat (TPR)-like superfamily protein	Tetratricopeptide repeat (TPR)-like superfamily protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
73260	Nbe.v1.1.chr04g14790	Nbe.v1.1.chr04g14790.1	Nbe.v1.s00130g14790	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr04:66967962-66970925	-		AT5G05340.1	Peroxidase superfamily protein	Peroxidase superfamily protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
63055	Nbe.v1.1.chr15g02950	Nbe.v1.1.chr15g02950.1	Nbe.v1.s00190g02950	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:168535573-168541689	-		AT3G20440.1	Alpha amylase family protein	Alpha amylase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries