N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 60

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g04230
Nbe.v1.1.chr17g04230.1
Nbe.v1.s00010g04230
Nbe.v1.1.chr17:174511195-174512144
-
Niben101Scf09189g01020.1
AT-hook motif nuclear-localized protein 22
AT-hook motif nuclear-localized protein 22
Nbe.v1.1.chr17g37540
Nbe.v1.1.chr17g37540.1
Nbe.v1.s00010g37540
Nbe.v1.1.chr17:51658908-51672313
-
Niben101Scf02062g04009.1
GW repeat- and PHD finger-containing protein NERD
NULL
Nbe.v1.1.chr17g42390
Nbe.v1.1.chr17g42390.1
Nbe.v1.s00010g42390
Nbe.v1.1.chr17:35605498-35628019
-
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr17g45440
Nbe.v1.1.chr17g45440.1
Nbe.v1.s00010g45440
Nbe.v1.1.chr17:24152676-24155466
-
Niben101Scf13617g00001.1
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
Nbe.v1.1.chr06g03970
Nbe.v1.1.chr06g03970.1
Nbe.v1.s00020g03970
Nbe.v1.1.chr06:139926126-139926830
-
GDSL-like Lipase/Acylhydrolase superfamily protein
NULL
Nbe.v1.1.chr06g20000
Nbe.v1.1.chr06g20000.1
Nbe.v1.s00020g20000
Nbe.v1.1.chr06:82671300-82676898
+
No description
Nbe.v1.1.chr06g20800
Nbe.v1.1.chr06g20800.1
Nbe.v1.s00020g20800
Nbe.v1.1.chr06:79747396-79751517
-
Niben101Scf00246g04005.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr06g26580
Nbe.v1.1.chr06g26580.1
Nbe.v1.s00020g26580
Nbe.v1.1.chr06:57836211-57837769
-
Niben101Scf03061g00007.1
O-acetyltransferase family protein
O-acetyltransferase family protein
Nbe.v1.1.chr05g19970
Nbe.v1.1.chr05g19970.1
Nbe.v1.s00030g19970
Nbe.v1.1.chr05:68846002-68847069
+
Niben101Scf14470g00011.1
Tropomyosin-like protein
Tropomyosin-related
Nbe.v1.1.chr05g31940
Nbe.v1.1.chr05g31940.1
Nbe.v1.s00030g31940
Nbe.v1.1.chr05:114686999-114689562
-
Niben101Scf02026g02002.1
photosystem I P subunit
photosystem I P subunit
Nbe.v1.1.chr05g35860
Nbe.v1.1.chr05g35860.1
Nbe.v1.s00030g35860
Nbe.v1.1.chr05:130368204-130368929
+
Niben101Scf03108g07001.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr05g35870
Nbe.v1.1.chr05g35870.1
Nbe.v1.s00030g35870
Nbe.v1.1.chr05:130368960-130371765
+
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr09g06710
Nbe.v1.1.chr09g06710.1
Nbe.v1.s00040g06710
Nbe.v1.1.chr09:125439950-125440580
+
Peroxidase superfamily protein
Peroxidase superfamily protein
Nbe.v1.1.chr09g10980
Nbe.v1.1.chr09g10980.1
Nbe.v1.s00040g10980
Nbe.v1.1.chr09:111581459-111585290
+
Niben101Scf00246g04005.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr09g31810
Nbe.v1.1.chr09g31810.1
Nbe.v1.s00040g31810
Nbe.v1.1.chr09:41215450-41227618
-
Niben101Scf03886g02010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr09g34320
Nbe.v1.1.chr09g34320.1
Nbe.v1.s00040g34320
Nbe.v1.1.chr09:32171610-32174398
-
Niben101Scf03392g11006.1
Pectinacetylesterase family protein
Pectinacetylesterase family protein
Nbe.v1.1.chr10g08600
Nbe.v1.1.chr10g08600.1
Nbe.v1.s00050g08600
Nbe.v1.1.chr10:27055569-27055937
+
LONGIFOLIA protein
NULL
Nbe.v1.1.chr10g29970
Nbe.v1.1.chr10g29970.1
Nbe.v1.s00050g29970
Nbe.v1.1.chr10:100822133-100831448
+
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr10g31080
Nbe.v1.1.chr10g31080.1
Nbe.v1.s00050g31080
Nbe.v1.1.chr10:105288121-105293470
-
Niben101Scf06068g00006.1
DNA ligase (DUF630 and DUF632)
Protein of unknown function (DUF630 and DUF632)
Nbe.v1.1.chr10g38520
Nbe.v1.1.chr10g38520.1
Nbe.v1.s00050g38520
Nbe.v1.1.chr10:130926587-130927554
+
Niben101Scf05348g03008.1
AT-hook motif nuclear-localized protein 22
AT-hook motif nuclear-localized protein 22
Nbe.v1.1.chr10g41230
Nbe.v1.1.chr10g41230.1
Nbe.v1.s00050g41230
Nbe.v1.1.chr10:140236977-140239737
-
Niben101Scf08819g01014.1
cation/H+ exchanger 18
NULL
Nbe.v1.1.chr19g09010
Nbe.v1.1.chr19g09010.1
Nbe.v1.s00060g09010
Nbe.v1.1.chr19:109286909-109290746
+
Niben101Scf08259g01002.1
No description
Nbe.v1.1.chr19g16960
Nbe.v1.1.chr19g16960.1
Nbe.v1.s00060g16960
Nbe.v1.1.chr19:82480698-82483093
-
Niben101Scf05298g00001.1
fructokinase-like 1
fructokinase-like 1
Nbe.v1.1.chr19g31680
Nbe.v1.1.chr19g31680.1
Nbe.v1.s00060g31680
Nbe.v1.1.chr19:36182572-36187721
-
Niben101Scf03600g04029.1
lysine histidine transporter 1
lysine histidine transporter 1
Nbe.v1.1.chr12g10250
Nbe.v1.1.chr12g10250.1
Nbe.v1.s00070g10250
Nbe.v1.1.chr12:106399910-106406144
-
Niben101Scf06855g01012.1
sporulation RMD1-like protein%2C putative (DUF155)
Protein of unknown function (DUF155)
Nbe.v1.1.chr12g21670
Nbe.v1.1.chr12g21670.1
Nbe.v1.s00070g21670
Nbe.v1.1.chr12:68418475-68420049
-
Niben101Scf00603g08012.1
histidine acid phosphatase family protein
histidine acid phosphatase family protein
Nbe.v1.1.chr12g37220
Nbe.v1.1.chr12g37220.1
Nbe.v1.s00070g37220
Nbe.v1.1.chr12:21576010-21577429
+
Niben101Scf12262g00001.1
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr08g11700
Nbe.v1.1.chr08g11700.1
Nbe.v1.s00080g11700
Nbe.v1.1.chr08:40855390-40862042
+
Niben101Scf02350g02013.1
transferases%2C transferring hexosyl groups
transferases, transferring hexosyl groups
Nbe.v1.1.chr08g15180
Nbe.v1.1.chr08g15180.1
Nbe.v1.s00080g15180
Nbe.v1.1.chr08:53202290-53206904
+
Niben101Scf01752g02011.1
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Nbe.v1.1.chr08g19040
Nbe.v1.1.chr08g19040.1
Nbe.v1.s00080g19040
Nbe.v1.1.chr08:69152472-69152894
+
lysm domain GPI-anchored protein 1 precursor
lysm domain GPI-anchored protein 1 precursor
Nbe.v1.1.chr08g27990
Nbe.v1.1.chr08g27990.1
Nbe.v1.s00080g27990
Nbe.v1.1.chr08:100534485-100544547
-
Niben101Scf14210g00010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr08g29560
Nbe.v1.1.chr08g29560.1
Nbe.v1.s00080g29560
Nbe.v1.1.chr08:107363551-107365701
+
Niben101Scf04953g09010.1
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr08g36760
Nbe.v1.1.chr08g36760.1
Nbe.v1.s00080g36760
Nbe.v1.1.chr08:132376522-132380123
+
Niben101Scf03077g03003.1
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Nbe.v1.1.chr02g00820
Nbe.v1.1.chr02g00820.1
Nbe.v1.s00090g00820
Nbe.v1.1.chr02:141366312-141370372
+
Niben101Scf03600g04029.1
lysine histidine transporter 1
lysine histidine transporter 1
Nbe.v1.1.chr02g21660
Nbe.v1.1.chr02g21660.1
Nbe.v1.s00090g21660
Nbe.v1.1.chr02:93564382-93569033
+
Niben101Scf03766g08003.1
glucuronokinase G
NULL
Nbe.v1.1.chr07g09920
Nbe.v1.1.chr07g09920.1
Nbe.v1.s00100g09920
Nbe.v1.1.chr07:101926238-101937141
-
Niben101Scf10390g00003.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr18g22430
Nbe.v1.1.chr18g22430.1
Nbe.v1.s00110g22430
Nbe.v1.1.chr18:65477563-65499991
+
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr18g30120
Nbe.v1.1.chr18g30120.1
Nbe.v1.s00110g30120
Nbe.v1.1.chr18:40025204-40031178
-
Niben101Scf15476g01015.1
Cobalamin biosynthesis CobW-like protein
Cobalamin biosynthesis CobW-like protein
Nbe.v1.1.chr18g34770
Nbe.v1.1.chr18g34770.1
Nbe.v1.s00110g34770
Nbe.v1.1.chr18:25553710-25567259
-
Niben101Scf03061g00007.1
O-acetyltransferase family protein
O-acetyltransferase family protein
Nbe.v1.1.chr13g25290
Nbe.v1.1.chr13g25290.1
Nbe.v1.s00120g25290
Nbe.v1.1.chr13:76805008-76816584
+
Niben101Scf01617g00005.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr13g45980
Nbe.v1.1.chr13g45980.1
Nbe.v1.s00120g45980
Nbe.v1.1.chr13:131718793-131724199
-
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr13g46000
Nbe.v1.1.chr13g46000.1
Nbe.v1.s00120g46000
Nbe.v1.1.chr13:131971640-131977373
+
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr14g00090
Nbe.v1.1.chr14g00090.1
Nbe.v1.s00140g00090
Nbe.v1.1.chr14:133287533-133287838
-
Niben101Scf03150g03001.1
U-box domain-containing protein kinase family protein
U-box domain-containing protein kinase family protein
Nbe.v1.1.chr03g13260
Nbe.v1.1.chr03g13260.1
Nbe.v1.s00150g13260
Nbe.v1.1.chr03:47158248-47162856
-
Niben101Scf03494g12002.1
D111/G-patch domain-containing protein
D111/G-patch domain-containing protein
Nbe.v1.1.chr03g28920
Nbe.v1.1.chr03g28920.1
Nbe.v1.s00150g28920
Nbe.v1.1.chr03:99282154-99286945
+
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr03g31270
Nbe.v1.1.chr03g31270.1
Nbe.v1.s00150g31270
Nbe.v1.1.chr03:104631838-104638949
+
Niben101Scf09025g02026.1
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr01g37010
Nbe.v1.1.chr01g37010.1
Nbe.v1.s00160g37010
Nbe.v1.1.chr01:20294866-20299010
+
Receptor-like protein kinase-related family protein
Receptor-like protein kinase-related family protein
Nbe.v1.1.chr11g08020
Nbe.v1.1.chr11g08020.1
Nbe.v1.s00170g08020
Nbe.v1.1.chr11:108711103-108715980
-
Niben101Scf03597g00015.1
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Nbe.v1.1.chr11g12400
Nbe.v1.1.chr11g12400.1
Nbe.v1.s00170g12400
Nbe.v1.1.chr11:96369836-96373012
-
Niben101Scf06876g00009.1
adenine phosphoribosyltransferase-like protein%2C putative (DUF2358)
Uncharacterized conserved protein (DUF2358)
Nbe.v1.1.chr11g26260
Nbe.v1.1.chr11g26260.1
Nbe.v1.s00170g26260
Nbe.v1.1.chr11:55183537-55189513
-
Niben101Scf11774g00003.1
chloroplastic lipocalin
chloroplastic lipocalin
Nbe.v1.1.chr11g30950
Nbe.v1.1.chr11g30950.1
Nbe.v1.s00170g30950
Nbe.v1.1.chr11:38600340-38607459
-
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr11g33380
Nbe.v1.1.chr11g33380.1
Nbe.v1.s00170g33380
Nbe.v1.1.chr11:30864884-30875555
-
Niben101Scf05166g01022.1
ABC2 homolog 6
ABC2 homolog 6
Nbe.v1.1.chr16g12640
Nbe.v1.1.chr16g12640.1
Nbe.v1.s00180g12640
Nbe.v1.1.chr16:115376975-115383369
+
Niben101Scf04473g04001.1
histidine acid phosphatase family protein
histidine acid phosphatase family protein
Nbe.v1.1.chr16g18700
Nbe.v1.1.chr16g18700.1
Nbe.v1.s00180g18700
Nbe.v1.1.chr16:139066276-139072556
+
Niben101Scf14210g00010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr16g21000
Nbe.v1.1.chr16g21000.1
Nbe.v1.s00180g21000
Nbe.v1.1.chr16:148855564-148857714
+
Niben101Scf06392g01004.1
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr16g23110
Nbe.v1.1.chr16g23110.1
Nbe.v1.s00180g23110
Nbe.v1.1.chr16:155450014-155451838
+
Niben101Scf06350g00013.1
hypothetical protein
NULL
Nbe.v1.1.chr15g05860
Nbe.v1.1.chr15g05860.1
Nbe.v1.s00190g05860
Nbe.v1.1.chr15:159026907-159027972
-
Niben101Scf07244g00009.1
Tropomyosin-like protein
Tropomyosin-related
Nbe.v1.1.chr15g12610
Nbe.v1.1.chr15g12610.1
Nbe.v1.s00190g12610
Nbe.v1.1.chr15:136325425-136335671
+
Niben101Scf00311g03009.1
HIS HF
HIS HF
Nbe.v1.1.chr15g21240
Nbe.v1.1.chr15g21240.1
Nbe.v1.s00190g21240
Nbe.v1.1.chr15:106254883-106255447
+
TRF-like 7
TRF-like 7
Nbe.v1.1.chr15g30160
Nbe.v1.1.chr15g30160.1
Nbe.v1.s00190g30160
Nbe.v1.1.chr15:72638122-72639660
-
ergosterol biosynthesis protein
homolog of yeast ergosterol28