N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 61

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g25830
Nbe.v1.1.chr17g25830.1
Nbe.v1.s00010g25830
Nbe.v1.1.chr17:98110348-98112850
+
Nucleotide-diphospho-sugar transferases superfamily protein
Nucleotide-diphospho-sugar transferases superfamily protein
Nbe.v1.1.chr17g29610
Nbe.v1.1.chr17g29610.1
Nbe.v1.s00010g29610
Nbe.v1.1.chr17:85823525-85824800
-
Niben101Scf06050g00002.1
zinc knuckle (CCHC-type) family protein
zinc knuckle (CCHC-type) family protein
Nbe.v1.1.chr17g32020
Nbe.v1.1.chr17g32020.1
Nbe.v1.s00010g32020
Nbe.v1.1.chr17:77280027-77280632
+
No description
Nbe.v1.1.chr06g03730
Nbe.v1.1.chr06g03730.1
Nbe.v1.s00020g03730
Nbe.v1.1.chr06:141015615-141044382
+
Niben101Scf03175g01014.1
Nuclear pore complex protein
Nuclear pore complex protein
Nbe.v1.1.chr06g06660
Nbe.v1.1.chr06g06660.1
Nbe.v1.s00020g06660
Nbe.v1.1.chr06:132106981-132110783
-
Niben101Scf03263g00007.1
methyl-coenzyme M reductase II subunit gamma%2C putative (DUF3741)
Protein of unknown function (DUF3741)
Nbe.v1.1.chr06g17210
Nbe.v1.1.chr06g17210.1
Nbe.v1.s00020g17210
Nbe.v1.1.chr06:92915471-92919260
+
Niben101Scf13164g01002.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr06g18520
Nbe.v1.1.chr06g18520.1
Nbe.v1.s00020g18520
Nbe.v1.1.chr06:87497232-87497507
-
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr05g00200
Nbe.v1.1.chr05g00200.1
Nbe.v1.s00030g00200
Nbe.v1.1.chr05:994356-995120
-
Leucine-rich repeat (LRR) family protein
NULL
Nbe.v1.1.chr05g01800
Nbe.v1.1.chr05g01800.1
Nbe.v1.s00030g01800
Nbe.v1.1.chr05:6329821-6331102
-
No description
Nbe.v1.1.chr05g10460
Nbe.v1.1.chr05g10460.1
Nbe.v1.s00030g10460
Nbe.v1.1.chr05:35795924-35798327
-
Niben101Scf00149g04002.1
hypothetical protein
NULL
Nbe.v1.1.chr05g12260
Nbe.v1.1.chr05g12260.1
Nbe.v1.s00030g12260
Nbe.v1.1.chr05:41174377-41174664
+
Sterile alpha motif (SAM) domain-containing protein
NULL
Nbe.v1.1.chr05g12450
Nbe.v1.1.chr05g12450.1
Nbe.v1.s00030g12450
Nbe.v1.1.chr05:42122647-42123018
-
Niben101Scf02665g02008.1
ALC-interacting protein 1
ALC-interacting protein 1
Nbe.v1.1.chr05g23310
Nbe.v1.1.chr05g23310.1
Nbe.v1.s00030g23310
Nbe.v1.1.chr05:80138322-80141865
-
Niben101Scf04727g07010.1
transmembrane protein
NULL
Nbe.v1.1.chr05g34650
Nbe.v1.1.chr05g34650.1
Nbe.v1.s00030g34650
Nbe.v1.1.chr05:125737882-125740546
-
U2 snRNP auxilliary factor%2C large subunit%2C splicing factor
U2 snRNP auxilliary factor, large subunit, splicing factor
Nbe.v1.1.chr09g13680
Nbe.v1.1.chr09g13680.1
Nbe.v1.s00040g13680
Nbe.v1.1.chr09:101773099-101775996
-
Niben101Scf00671g00003.1
RB1-inducible coiled-coil protein
NULL
Nbe.v1.1.chr10g02250
Nbe.v1.1.chr10g02250.1
Nbe.v1.s00050g02250
Nbe.v1.1.chr10:6143879-6147109
-
Niben101Scf02278g00001.1
hypothetical protein
NULL
Nbe.v1.1.chr10g27830
Nbe.v1.1.chr10g27830.1
Nbe.v1.s00050g27830
Nbe.v1.1.chr10:93366152-93374710
+
SART-1 family
NULL
Nbe.v1.1.chr19g08660
Nbe.v1.1.chr19g08660.1
Nbe.v1.s00060g08660
Nbe.v1.1.chr19:110873605-110874875
+
Niben101Ctg16284g00001.1
hypothetical protein
NULL
Nbe.v1.1.chr19g13060
Nbe.v1.1.chr19g13060.1
Nbe.v1.s00060g13060
Nbe.v1.1.chr19:93371540-93372421
+
Niben101Scf04329g04001.1
hypothetical protein
NULL
Nbe.v1.1.chr19g14300
Nbe.v1.1.chr19g14300.1
Nbe.v1.s00060g14300
Nbe.v1.1.chr19:90186224-90187501
+
Niben101Scf02521g01012.1
F-box and associated interaction domains-containing protein
NULL
Nbe.v1.1.chr19g18190
Nbe.v1.1.chr19g18190.1
Nbe.v1.s00060g18190
Nbe.v1.1.chr19:77927673-77929915
+
Niben101Scf02674g00001.1
hypothetical protein
NULL
Nbe.v1.1.chr19g25190
Nbe.v1.1.chr19g25190.1
Nbe.v1.s00060g25190
Nbe.v1.1.chr19:51183092-51185005
-
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr19g42350
Nbe.v1.1.chr19g42350.1
Nbe.v1.s00060g42350
Nbe.v1.1.chr19:9367689-9371859
+
Niben101Scf02381g05007.1
DnaA initiator-associating protein
NULL
Nbe.v1.1.chr12g29420
Nbe.v1.1.chr12g29420.1
Nbe.v1.s00070g29420
Nbe.v1.1.chr12:44888183-44892335
+
Niben101Scf03689g01014.1
RB1-inducible coiled-coil protein
NULL
Nbe.v1.1.chr12g29550
Nbe.v1.1.chr12g29550.1
Nbe.v1.s00070g29550
Nbe.v1.1.chr12:44468858-44471779
-
Niben101Scf01603g00006.1
ubiquinone biosynthesis COQ9-like protein
NULL
Nbe.v1.1.chr08g16280
Nbe.v1.1.chr08g16280.1
Nbe.v1.s00080g16280
Nbe.v1.1.chr08:56545958-56547982
+
No description
Nbe.v1.1.chr08g26070
Nbe.v1.1.chr08g26070.1
Nbe.v1.s00080g26070
Nbe.v1.1.chr08:93597340-93604928
+
Niben101Scf05175g03007.1
Transmembrane Fragile-X-F-associated protein
Transmembrane Fragile-X-F-associated protein
Nbe.v1.1.chr02g05650
Nbe.v1.1.chr02g05650.1
Nbe.v1.s00090g05650
Nbe.v1.1.chr02:130711586-130723158
-
Niben101Scf02145g07011.1
Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Nbe.v1.1.chr02g15230
Nbe.v1.1.chr02g15230.1
Nbe.v1.s00090g15230
Nbe.v1.1.chr02:110397398-110401463
-
Niben101Scf02041g05002.1
RB1-inducible coiled-coil protein
NULL
Nbe.v1.1.chr02g16950
Nbe.v1.1.chr02g16950.1
Nbe.v1.s00090g16950
Nbe.v1.1.chr02:106530824-106534981
+
Niben101Scf01991g01018.1
DnaA initiator-associating protein
NULL
Nbe.v1.1.chr02g19980
Nbe.v1.1.chr02g19980.1
Nbe.v1.s00090g19980
Nbe.v1.1.chr02:98191399-98193318
-
Niben101Scf00069g13003.1
hypothetical protein
NULL
Nbe.v1.1.chr07g00580
Nbe.v1.1.chr07g00580.1
Nbe.v1.s00100g00580
Nbe.v1.1.chr07:140513005-140519581
+
Niben101Scf02581g03002.1
TUDOR-SN protein 1
TUDOR-SN protein 1
Nbe.v1.1.chr07g27850
Nbe.v1.1.chr07g27850.1
Nbe.v1.s00100g27850
Nbe.v1.1.chr07:33898370-33907052
-
Niben101Scf05488g00005.1
RHOMBOID-like protein 14
RHOMBOID-like protein 14
Nbe.v1.1.chr07g28720
Nbe.v1.1.chr07g28720.1
Nbe.v1.s00100g28720
Nbe.v1.1.chr07:31032722-31035641
-
Niben101Scf00975g01004.1
zinc finger CCCH domain protein
NULL
Nbe.v1.1.chr07g30280
Nbe.v1.1.chr07g30280.1
Nbe.v1.s00100g30280
Nbe.v1.1.chr07:24855543-24856175
-
DNA repair ATPase-like protein
DNA repair ATPase-related
Nbe.v1.1.chr18g05430
Nbe.v1.1.chr18g05430.1
Nbe.v1.s00110g05430
Nbe.v1.1.chr18:124558542-124562308
+
Niben101Scf01100g04004.1
transmembrane protein
NULL
Nbe.v1.1.chr18g13100
Nbe.v1.1.chr18g13100.1
Nbe.v1.s00110g13100
Nbe.v1.1.chr18:98673413-98677157
-
SDA1 family protein
SDA1 family protein
Nbe.v1.1.chr13g04890
Nbe.v1.1.chr13g04890.1
Nbe.v1.s00120g04890
Nbe.v1.1.chr13:16345615-16348573
-
Niben101Scf03925g02005.1
zinc finger CCCH domain protein
NULL
Nbe.v1.1.chr13g12310
Nbe.v1.1.chr13g12310.1
Nbe.v1.s00120g12310
Nbe.v1.1.chr13:36276531-36282140
-
Niben101Scf06008g01017.1
LONGIFOLIA protein
NULL
Nbe.v1.1.chr13g18710
Nbe.v1.1.chr13g18710.1
Nbe.v1.s00120g18710
Nbe.v1.1.chr13:58856044-58859001
-
Niben101Scf05552g04006.1
LOW protein: M-phase inducer phosphatase-like protein
NULL
Nbe.v1.1.chr13g21500
Nbe.v1.1.chr13g21500.1
Nbe.v1.s00120g21500
Nbe.v1.1.chr13:66839965-66845061
+
stress response NST1-like protein
NULL
Nbe.v1.1.chr13g25030
Nbe.v1.1.chr13g25030.1
Nbe.v1.s00120g25030
Nbe.v1.1.chr13:75848457-75853529
+
Niben101Scf14958g00035.1
DEK domain-containing chromatin associated protein
DEK domain-containing chromatin associated protein
Nbe.v1.1.chr04g10160
Nbe.v1.1.chr04g10160.1
Nbe.v1.s00130g10160
Nbe.v1.1.chr04:84314804-84316168
-
P-loop containing nucleoside triphosphate hydrolases superfamily protein
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Nbe.v1.1.chr04g14500
Nbe.v1.1.chr04g14500.1
Nbe.v1.s00130g14500
Nbe.v1.1.chr04:67563070-67567998
-
Niben101Scf00712g08013.1
ARM repeat superfamily protein
ARM repeat superfamily protein
Nbe.v1.1.chr14g00780
Nbe.v1.1.chr14g00780.1
Nbe.v1.s00140g00780
Nbe.v1.1.chr14:130526974-130536218
-
Niben101Scf01627g02013.1
Transmembrane Fragile-X-F-associated protein
Transmembrane Fragile-X-F-associated protein
Nbe.v1.1.chr14g02220
Nbe.v1.1.chr14g02220.1
Nbe.v1.s00140g02220
Nbe.v1.1.chr14:125068907-125071739
-
Niben101Scf01664g02019.1
No description
Nbe.v1.1.chr14g13350
Nbe.v1.1.chr14g13350.1
Nbe.v1.s00140g13350
Nbe.v1.1.chr14:86005689-86006314
-
Cysteine proteinases superfamily protein
Cysteine proteinases superfamily protein
Nbe.v1.1.chr03g23470
Nbe.v1.1.chr03g23470.1
Nbe.v1.s00150g23470
Nbe.v1.1.chr03:84551157-84554087
-
Niben101Scf05552g04006.1
LOW protein: M-phase inducer phosphatase-like protein
NULL
Nbe.v1.1.chr03g35450
Nbe.v1.1.chr03g35450.1
Nbe.v1.s00150g35450
Nbe.v1.1.chr03:113399928-113405444
+
Niben101Scf06008g01017.1
LONGIFOLIA protein
NULL
Nbe.v1.1.chr03g38520
Nbe.v1.1.chr03g38520.1
Nbe.v1.s00150g38520
Nbe.v1.1.chr03:120085768-120092200
-
Niben101Scf02581g03002.1
TUDOR-SN protein 1
TUDOR-SN protein 1
Nbe.v1.1.chr01g28150
Nbe.v1.1.chr01g28150.1
Nbe.v1.s00160g28150
Nbe.v1.1.chr01:40504149-40509580
+
Niben101Scf00332g02013.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr01g28930
Nbe.v1.1.chr01g28930.1
Nbe.v1.s00160g28930
Nbe.v1.1.chr01:38997190-39000569
-
Niben101Scf00369g18020.1
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr01g38550
Nbe.v1.1.chr01g38550.1
Nbe.v1.s00160g38550
Nbe.v1.1.chr01:16388604-16390868
-
Niben101Scf03599g01007.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr11g39040
Nbe.v1.1.chr11g39040.1
Nbe.v1.s00170g39040
Nbe.v1.1.chr11:13225869-13232188
-
Niben101Scf04276g00003.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr11g41180
Nbe.v1.1.chr11g41180.1
Nbe.v1.s00170g41180
Nbe.v1.1.chr11:2217150-2225692
+
Niben101Scf01628g02006.1
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr16g08980
Nbe.v1.1.chr16g08980.1
Nbe.v1.s00180g08980
Nbe.v1.1.chr16:101674758-101678291
+
Niben101Scf01126g00002.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr16g25680
Nbe.v1.1.chr16g25680.1
Nbe.v1.s00180g25680
Nbe.v1.1.chr16:161816746-161858483
-
Niben101Scf06258g00019.1
Nuclear pore complex protein
Nuclear pore complex protein
Nbe.v1.1.chr16g29260
Nbe.v1.1.chr16g29260.1
Nbe.v1.s00180g29260
Nbe.v1.1.chr16:174555830-174559591
-
Niben101Scf04172g01004.1
methyl-coenzyme M reductase II subunit gamma%2C putative (DUF3741)
Protein of unknown function (DUF3741)
Nbe.v1.1.chr15g30750
Nbe.v1.1.chr15g30750.1
Nbe.v1.s00190g30750
Nbe.v1.1.chr15:70939417-70939872
+
Niben101Scf00152g01001.1
Putative membrane lipoprotein
Putative membrane lipoprotein
Nbe.v1.1.chr16g33810
Nbe.v1.1.chr16g33810.1
Nbe.v1.s00200g02400
Nbe.v1.1.chr16:5719101-5722421
-
Niben101Scf08151g00002.1
hypothetical protein
NULL
Nbe.v1.1.chr15g47550
Nbe.v1.1.chr15g47550.1
Nbe.v1.s00210g15200
Nbe.v1.1.chr15:10571022-10572405
+
SART-1 family
NULL