N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 50

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g12950
Nbe.v1.1.chr17g12950.1
Nbe.v1.s00010g12950
Nbe.v1.1.chr17:147816503-147820550
+
Niben101Scf06024g00002.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Nbe.v1.1.chr17g47170
Nbe.v1.1.chr17g47170.1
Nbe.v1.s00010g47170
Nbe.v1.1.chr17:17495618-17497315
-
Niben101Scf01124g12003.1
O-fucosyltransferase family protein
O-fucosyltransferase family protein
Nbe.v1.1.chr06g17860
Nbe.v1.1.chr06g17860.1
Nbe.v1.s00020g17860
Nbe.v1.1.chr06:90196398-90196736
+
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Nbe.v1.1.chr05g14350
Nbe.v1.1.chr05g14350.1
Nbe.v1.s00030g14350
Nbe.v1.1.chr05:48122504-48122785
+
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr05g21200
Nbe.v1.1.chr05g21200.1
Nbe.v1.s00030g21200
Nbe.v1.1.chr05:72995149-72996721
-
Niben101Scf06089g00009.1
zinc knuckle (CCHC-type) family protein
zinc knuckle (CCHC-type) family protein
Nbe.v1.1.chr05g24870
Nbe.v1.1.chr05g24870.1
Nbe.v1.s00030g24870
Nbe.v1.1.chr05:86558186-86584890
+
Niben101Scf01438g05003.1
MUTS homolog 7
MUTS homolog 7
Nbe.v1.1.chr09g32390
Nbe.v1.1.chr09g32390.1
Nbe.v1.s00040g32390
Nbe.v1.1.chr09:39368234-39371571
-
Niben101Scf05634g00001.1
nuclear factor Y%2C subunit C1
nuclear factor Y, subunit C1
Nbe.v1.1.chr10g10100
Nbe.v1.1.chr10g10100.1
Nbe.v1.s00050g10100
Nbe.v1.1.chr10:32882929-32884534
+
Niben101Scf04217g02009.1
putative glycerol-3-phosphate transporter 1
NULL
Nbe.v1.1.chr10g18980
Nbe.v1.1.chr10g18980.1
Nbe.v1.s00050g18980
Nbe.v1.1.chr10:65814390-65824410
+
Niben101Scf01695g02013.1
nudix hydrolase homolog 2
NULL
Nbe.v1.1.chr10g27020
Nbe.v1.1.chr10g27020.1
Nbe.v1.s00050g27020
Nbe.v1.1.chr10:90381444-90383312
+
Niben101Scf09790g00012.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr10g27030
Nbe.v1.1.chr10g27030.1
Nbe.v1.s00050g27030
Nbe.v1.1.chr10:90389766-90391910
-
Niben101Scf09790g00019.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr10g34040
Nbe.v1.1.chr10g34040.1
Nbe.v1.s00050g34040
Nbe.v1.1.chr10:116176710-116181813
+
Niben101Scf00404g00004.1
bromodomain 4
bromodomain 4
Nbe.v1.1.chr10g39970
Nbe.v1.1.chr10g39970.1
Nbe.v1.s00050g39970
Nbe.v1.1.chr10:136668933-136678351
-
GDSL-like Lipase/Acylhydrolase superfamily protein
GDSL-like Lipase/Acylhydrolase superfamily protein
Nbe.v1.1.chr19g19070
Nbe.v1.1.chr19g19070.1
Nbe.v1.s00060g19070
Nbe.v1.1.chr19:75124549-75126745
-
Niben101Scf02430g00010.1
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Nbe.v1.1.chr19g23480
Nbe.v1.1.chr19g23480.1
Nbe.v1.s00060g23480
Nbe.v1.1.chr19:56819258-56823034
-
Niben101Scf10332g01008.1
formin homology 1
formin homology 1
Nbe.v1.1.chr19g30770
Nbe.v1.1.chr19g30770.1
Nbe.v1.s00060g30770
Nbe.v1.1.chr19:38062268-38070469
-
Niben101Scf00046g00003.1
Sucrase/ferredoxin-like family protein
NULL
Nbe.v1.1.chr12g02260
Nbe.v1.1.chr12g02260.1
Nbe.v1.s00070g02260
Nbe.v1.1.chr12:136132099-136133000
-
cation calcium exchanger 4
cation calcium exchanger 4
Nbe.v1.1.chr12g19590
Nbe.v1.1.chr12g19590.1
Nbe.v1.s00070g19590
Nbe.v1.1.chr12:73629423-73642460
-
Niben101Scf01695g02013.1
nudix hydrolase homolog 2
NULL
Nbe.v1.1.chr12g20410
Nbe.v1.1.chr12g20410.1
Nbe.v1.s00070g20410
Nbe.v1.1.chr12:71296355-71296627
-
Copia-like polyprotein/retrotransposon
NULL
Nbe.v1.1.chr12g32970
Nbe.v1.1.chr12g32970.1
Nbe.v1.s00070g32970
Nbe.v1.1.chr12:35090282-35094269
-
Niben101Scf13530g01009.1
cytochrome B561-1
cytochrome B561-1
Nbe.v1.1.chr08g17460
Nbe.v1.1.chr08g17460.1
Nbe.v1.s00080g17460
Nbe.v1.1.chr08:61506499-61513666
-
Niben101Scf03584g05009.1
ENHANCED DISEASE RESISTANCE 2
ENHANCED DISEASE RESISTANCE 2
Nbe.v1.1.chr08g34370
Nbe.v1.1.chr08g34370.1
Nbe.v1.s00080g34370
Nbe.v1.1.chr08:124374591-124403891
-
Niben101Scf03584g05009.1
ENHANCED DISEASE RESISTANCE 2
ENHANCED DISEASE RESISTANCE 2
Nbe.v1.1.chr02g01370
Nbe.v1.1.chr02g01370.1
Nbe.v1.s00090g01370
Nbe.v1.1.chr02:140265819-140272492
+
Niben101Scf00046g00003.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr02g13940
Nbe.v1.1.chr02g13940.1
Nbe.v1.s00090g13940
Nbe.v1.1.chr02:113264606-113276206
-
Niben101Scf01455g01020.1
ZPR1 zinc-finger domain protein
ZPR1 zinc-finger domain protein
Nbe.v1.1.chr02g21740
Nbe.v1.1.chr02g21740.1
Nbe.v1.s00090g21740
Nbe.v1.1.chr02:93401085-93404442
+
Niben101Scf03766g10009.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr07g25860
Nbe.v1.1.chr07g25860.1
Nbe.v1.s00100g25860
Nbe.v1.1.chr07:41542513-41546688
+
Niben101Scf02540g00013.1
AINTEGUMENTA-like 5
AINTEGUMENTA-like 5
Nbe.v1.1.chr07g27020
Nbe.v1.1.chr07g27020.1
Nbe.v1.s00100g27020
Nbe.v1.1.chr07:37297809-37298447
-
Niben101Ctg16348g00001.1
spermidine hydroxycinnamoyl transferase
spermidine hydroxycinnamoyl transferase
Nbe.v1.1.chr18g01910
Nbe.v1.1.chr18g01910.1
Nbe.v1.s00110g01910
Nbe.v1.1.chr18:135699050-135699824
+
PsbP-like protein 1
PsbP-like protein 1
Nbe.v1.1.chr18g11420
Nbe.v1.1.chr18g11420.1
Nbe.v1.s00110g11420
Nbe.v1.1.chr18:103981302-103982132
+
Niben101Scf08274g00009.1
hydroxy methylglutaryl CoA reductase 1
hydroxy methylglutaryl CoA reductase 1
Nbe.v1.1.chr18g19490
Nbe.v1.1.chr18g19490.1
Nbe.v1.s00110g19490
Nbe.v1.1.chr18:75607128-75641644
+
Niben101Scf03584g05009.1
ENHANCED DISEASE RESISTANCE 2
ENHANCED DISEASE RESISTANCE 2
Nbe.v1.1.chr18g28260
Nbe.v1.1.chr18g28260.1
Nbe.v1.s00110g28260
Nbe.v1.1.chr18:45437739-45446405
+
Niben101Scf06286g02004.1
RNA-binding (RRM/RBD/RNP motifs) family protein
RNA-binding (RRM/RBD/RNP motifs) family protein
Nbe.v1.1.chr18g38190
Nbe.v1.1.chr18g38190.1
Nbe.v1.s00110g38190
Nbe.v1.1.chr18:12727877-12730404
-
Niben101Scf03138g01010.1
DNAJ homologue 2
DNAJ homologue 2
Nbe.v1.1.chr18g38810
Nbe.v1.1.chr18g38810.1
Nbe.v1.s00110g38810
Nbe.v1.1.chr18:9947853-9948494
+
UDP-glucosyl transferase 73C2
UDP-glucosyl transferase 73C2
Nbe.v1.1.chr18g40850
Nbe.v1.1.chr18g40850.1
Nbe.v1.s00110g40850
Nbe.v1.1.chr18:3108523-3110791
-
Niben101Scf05627g00006.1
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr13g15040
Nbe.v1.1.chr13g15040.1
Nbe.v1.s00120g15040
Nbe.v1.1.chr13:43974391-43981684
-
Niben101Scf02133g08008.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr04g00020
Nbe.v1.1.chr04g00020.1
Nbe.v1.s00130g00020
Nbe.v1.1.chr04:135189005-135191976
+
Niben101Scf02816g07016.1
nucleophosmin
NULL
Nbe.v1.1.chr04g27740
Nbe.v1.1.chr04g27740.1
Nbe.v1.s00130g27740
Nbe.v1.1.chr04:20632500-20634378
-
Niben101Scf04400g03002.1
plasmodesmata callose-binding protein 3
NULL
Nbe.v1.1.chr14g39410
Nbe.v1.1.chr14g39410.1
Nbe.v1.s00140g39410
Nbe.v1.1.chr14:8327572-8335084
-
Niben101Scf01145g03001.1
ENHANCED DISEASE RESISTANCE 2
ENHANCED DISEASE RESISTANCE 2
Nbe.v1.1.chr01g20810
Nbe.v1.1.chr01g20810.1
Nbe.v1.s00160g20810
Nbe.v1.1.chr01:59916280-59947223
+
Niben101Scf02400g02015.1
GRAM domain family protein
GRAM domain family protein
Nbe.v1.1.chr01g32530
Nbe.v1.1.chr01g32530.1
Nbe.v1.s00160g32530
Nbe.v1.1.chr01:31337598-31342475
+
Niben101Scf02167g00009.1
aminophospholipid ATPase 1
aminophospholipid ATPase 1
Nbe.v1.1.chr11g11590
Nbe.v1.1.chr11g11590.1
Nbe.v1.s00170g11590
Nbe.v1.1.chr11:98535466-98540304
-
Niben101Scf21069g00002.1
aminophospholipid ATPase 1
aminophospholipid ATPase 1
Nbe.v1.1.chr11g12100
Nbe.v1.1.chr11g12100.1
Nbe.v1.s00170g12100
Nbe.v1.1.chr11:97020614-97026936
+
Niben101Scf02792g01032.1
ABC-2 type transporter family protein
ABC-2 type transporter family protein
Nbe.v1.1.chr16g19810
Nbe.v1.1.chr16g19810.1
Nbe.v1.s00180g19810
Nbe.v1.1.chr16:144186667-144193668
-
Niben101Scf00885g20004.1
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Nbe.v1.1.chr15g14170
Nbe.v1.1.chr15g14170.1
Nbe.v1.s00190g14170
Nbe.v1.1.chr15:131319867-131323978
-
Niben101Scf02133g08008.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr15g18460
Nbe.v1.1.chr15g18460.1
Nbe.v1.s00190g18460
Nbe.v1.1.chr15:114233635-114237011
-
Niben101Scf06986g00012.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr15g23300
Nbe.v1.1.chr15g23300.1
Nbe.v1.s00190g23300
Nbe.v1.1.chr15:97262026-97264532
+
Niben101Scf04182g02003.1
expansin A4
expansin A4
Nbe.v1.1.chr15g31460
Nbe.v1.1.chr15g31460.1
Nbe.v1.s00190g31460
Nbe.v1.1.chr15:69414954-69416828
-
Niben101Scf00317g11002.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr15g31470
Nbe.v1.1.chr15g31470.1
Nbe.v1.s00190g31470
Nbe.v1.1.chr15:69391252-69395885
+
Niben101Scf00317g11013.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr16g34980
Nbe.v1.1.chr16g34980.1
Nbe.v1.s00200g03570
Nbe.v1.1.chr16:8970881-8975245
+
Niben101Scf18343g00013.1
Lycopene beta/epsilon cyclase protein
Lycopene beta/epsilon cyclase protein
Nbe.v1.1.chr16g47440
Nbe.v1.1.chr16g47440.1
Nbe.v1.s00200g16030
Nbe.v1.1.chr16:46221167-46225562
-
No description