N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 30

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g31440
Nbe.v1.1.chr17g31440.1
Nbe.v1.s00010g31440
Nbe.v1.1.chr17:79515449-79521393
-
Niben101Scf07854g00008.1
PIF / Ping-Pong family of plant transposase
PIF / Ping-Pong family of plant transposases
Nbe.v1.1.chr17g39750
Nbe.v1.1.chr17g39750.1
Nbe.v1.s00010g39750
Nbe.v1.1.chr17:44482692-44484230
+
Niben101Scf34484g00001.1
nuclease
NULL
Nbe.v1.1.chr17g42390
Nbe.v1.1.chr17g42390.1
Nbe.v1.s00010g42390
Nbe.v1.1.chr17:35605498-35628019
-
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr05g17690
Nbe.v1.1.chr05g17690.1
Nbe.v1.s00030g17690
Nbe.v1.1.chr05:61273599-61274584
+
Niben101Scf00085g03003.1
FTSH protease 4
FTSH protease 4
Nbe.v1.1.chr05g18540
Nbe.v1.1.chr05g18540.1
Nbe.v1.s00030g18540
Nbe.v1.1.chr05:63899918-63901399
-
Niben101Scf05756g00005.1
nuclease
NULL
Nbe.v1.1.chr09g15480
Nbe.v1.1.chr09g15480.1
Nbe.v1.s00040g15480
Nbe.v1.1.chr09:94755400-94756236
+
Niben101Scf07091g02004.1
Histone superfamily protein
Histone superfamily protein
Nbe.v1.1.chr09g17550
Nbe.v1.1.chr09g17550.1
Nbe.v1.s00040g17550
Nbe.v1.1.chr09:87858534-87861744
-
Niben101Scf00104g04002.1
nuclease
NULL
Nbe.v1.1.chr09g40740
Nbe.v1.1.chr09g40740.1
Nbe.v1.s00040g40740
Nbe.v1.1.chr09:6620924-6621475
-
Niben101Scf04879g07002.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr10g01320
Nbe.v1.1.chr10g01320.1
Nbe.v1.s00050g01320
Nbe.v1.1.chr10:3496868-3535509
-
Niben101Scf01314g01010.1
nuclear pore complex protein (DUF3414)
NULL
Nbe.v1.1.chr10g03490
Nbe.v1.1.chr10g03490.1
Nbe.v1.s00050g03490
Nbe.v1.1.chr10:10016871-10017836
+
Niben101Scf02790g02017.1
nuclease
NULL
Nbe.v1.1.chr10g18260
Nbe.v1.1.chr10g18260.1
Nbe.v1.s00050g18260
Nbe.v1.1.chr10:63408883-63409965
+
Niben101Scf10015g05001.1
PIF / Ping-Pong family of plant transposase
PIF / Ping-Pong family of plant transposases
Nbe.v1.1.chr10g27900
Nbe.v1.1.chr10g27900.1
Nbe.v1.s00050g27900
Nbe.v1.1.chr10:93590368-93591912
+
Niben101Scf00439g06003.1
nuclease
NULL
Nbe.v1.1.chr19g27740
Nbe.v1.1.chr19g27740.1
Nbe.v1.s00060g27740
Nbe.v1.1.chr19:44898148-44899716
-
Niben101Scf09554g00006.1
calmodulin-binding protein-like protein
calmodulin-binding protein-related
Nbe.v1.1.chr08g05130
Nbe.v1.1.chr08g05130.1
Nbe.v1.s00080g05130
Nbe.v1.1.chr08:16481049-16489374
-
Niben101Scf07854g00008.1
PIF / Ping-Pong family of plant transposase
PIF / Ping-Pong family of plant transposases
Nbe.v1.1.chr02g01240
Nbe.v1.1.chr02g01240.1
Nbe.v1.s00090g01240
Nbe.v1.1.chr02:140579547-140582451
+
Niben101Scf00046g04019.1
GDSL-like Lipase/Acylhydrolase superfamily protein
GDSL-like Lipase/Acylhydrolase superfamily protein
Nbe.v1.1.chr07g00850
Nbe.v1.1.chr07g00850.1
Nbe.v1.s00100g00850
Nbe.v1.1.chr07:139832333-139833589
+
Niben101Scf07141g00013.1
transcriptional regulator of RNA polII%2C SAGA%2C subunit
NULL
Nbe.v1.1.chr07g32110
Nbe.v1.1.chr07g32110.1
Nbe.v1.s00100g32110
Nbe.v1.1.chr07:17970441-17977399
+
Niben101Scf07305g00001.1
LOW protein: nuclease-like protein
NULL
Nbe.v1.1.chr18g01640
Nbe.v1.1.chr18g01640.1
Nbe.v1.s00110g01640
Nbe.v1.1.chr18:136635915-136637420
-
Niben101Scf05756g00005.1
nuclease
NULL
Nbe.v1.1.chr18g36380
Nbe.v1.1.chr18g36380.1
Nbe.v1.s00110g36380
Nbe.v1.1.chr18:19440715-19455329
+
Niben101Scf00971g00014.1
UDP-Glycosyltransferase superfamily protein
UDP-Glycosyltransferase superfamily protein
Nbe.v1.1.chr13g03280
Nbe.v1.1.chr13g03280.1
Nbe.v1.s00120g03280
Nbe.v1.1.chr13:10275455-10276744
-
Niben101Scf07305g00001.1
LOW protein: nuclease-like protein
NULL
Nbe.v1.1.chr13g10340
Nbe.v1.1.chr13g10340.1
Nbe.v1.s00120g10340
Nbe.v1.1.chr13:32120538-32124136
-
Niben101Scf00456g00008.1
5'-3' exonuclease family protein
5'-3' exonuclease family protein
Nbe.v1.1.chr03g38340
Nbe.v1.1.chr03g38340.1
Nbe.v1.s00150g38340
Nbe.v1.1.chr03:119737938-119739218
+
Niben101Scf07141g00013.1
transcriptional regulator of RNA polII%2C SAGA%2C subunit
NULL
Nbe.v1.1.chr01g19010
Nbe.v1.1.chr01g19010.1
Nbe.v1.s00160g19010
Nbe.v1.1.chr01:65457485-65459100
-
Niben101Scf02325g03023.1
KAR-UP F-box 1
KAR-UP F-box 1
Nbe.v1.1.chr01g42620
Nbe.v1.1.chr01g42620.1
Nbe.v1.s00160g42620
Nbe.v1.1.chr01:7546209-7547576
-
Niben101Scf00372g02013.1
PIF / Ping-Pong family of plant transposase
PIF / Ping-Pong family of plant transposases
Nbe.v1.1.chr11g22610
Nbe.v1.1.chr11g22610.1
Nbe.v1.s00170g22610
Nbe.v1.1.chr11:70478940-70479962
-
Niben101Scf00372g02013.1
PIF / Ping-Pong family of plant transposase
PIF / Ping-Pong family of plant transposases
Nbe.v1.1.chr16g08820
Nbe.v1.1.chr16g08820.1
Nbe.v1.s00180g08820
Nbe.v1.1.chr16:101021564-101032866
+
Niben101Scf01934g01015.1
WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein
NULL
Nbe.v1.1.chr16g20320
Nbe.v1.1.chr16g20320.1
Nbe.v1.s00180g20320
Nbe.v1.1.chr16:145564358-145599890
+
Niben101Scf06528g04016.1
multidrug resistance-associated protein 2
multidrug resistance-associated protein 2
Nbe.v1.1.chr15g08320
Nbe.v1.1.chr15g08320.1
Nbe.v1.s00190g08320
Nbe.v1.1.chr15:150103815-150107408
-
Niben101Scf01934g01015.1
WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein
NULL
Nbe.v1.1.chr16g32890
Nbe.v1.1.chr16g32890.1
Nbe.v1.s00200g01480
Nbe.v1.1.chr16:3534689-3562237
-
Niben101Scf01314g01010.1
nuclear pore complex protein (DUF3414)
NULL
Nbe.v1.1.chr16g35030
Nbe.v1.1.chr16g35030.1
Nbe.v1.s00200g03620
Nbe.v1.1.chr16:9106976-9108397
+
Niben101Scf02790g02017.1
nuclease
NULL