N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 42

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g17510
Nbe.v1.1.chr17g17510.1
Nbe.v1.s00010g17510
Nbe.v1.1.chr17:129435956-129436351
+
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr17g19400
Nbe.v1.1.chr17g19400.1
Nbe.v1.s00010g19400
Nbe.v1.1.chr17:121280680-121289635
-
Niben101Scf01388g00004.1
poly(ADP-ribose) polymerase
NULL
Nbe.v1.1.chr05g07630
Nbe.v1.1.chr05g07630.1
Nbe.v1.s00030g07630
Nbe.v1.1.chr05:26782549-26782815
-
No description
Nbe.v1.1.chr05g36660
Nbe.v1.1.chr05g36660.1
Nbe.v1.s00030g36660
Nbe.v1.1.chr05:134595181-134596335
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr09g16530
Nbe.v1.1.chr09g16530.1
Nbe.v1.s00040g16530
Nbe.v1.1.chr09:90754471-90757338
+
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr09g25620
Nbe.v1.1.chr09g25620.1
Nbe.v1.s00040g25620
Nbe.v1.1.chr09:63202658-63205459
-
Niben101Scf04216g06004.1
vascular related NAC-domain protein 7
NULL
Nbe.v1.1.chr10g19100
Nbe.v1.1.chr10g19100.1
Nbe.v1.s00050g19100
Nbe.v1.1.chr10:66165063-66166616
+
Niben101Scf02911g07002.1
SCARECROW-like 13
NULL
Nbe.v1.1.chr10g31990
Nbe.v1.1.chr10g31990.1
Nbe.v1.s00050g31990
Nbe.v1.1.chr10:108608665-108609901
+
Niben101Scf02115g04004.1
Eukaryotic aspartyl protease family protein
Eukaryotic aspartyl protease family protein
Nbe.v1.1.chr19g06760
Nbe.v1.1.chr19g06760.1
Nbe.v1.s00060g06760
Nbe.v1.1.chr19:117920022-117921759
+
Niben101Scf10006g00001.1
D-3-phosphoglycerate dehydrogenase
D-3-phosphoglycerate dehydrogenase
Nbe.v1.1.chr19g42840
Nbe.v1.1.chr19g42840.1
Nbe.v1.s00060g42840
Nbe.v1.1.chr19:7934097-7934444
+
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr12g01230
Nbe.v1.1.chr12g01230.1
Nbe.v1.s00070g01230
Nbe.v1.1.chr12:140194759-140199381
+
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr12g03260
Nbe.v1.1.chr12g03260.1
Nbe.v1.s00070g03260
Nbe.v1.1.chr12:131560780-131561214
+
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Nbe.v1.1.chr12g15370
Nbe.v1.1.chr12g15370.1
Nbe.v1.s00070g15370
Nbe.v1.1.chr12:87113982-87114686
+
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr08g29270
Nbe.v1.1.chr08g29270.1
Nbe.v1.s00080g29270
Nbe.v1.1.chr08:105877282-105877578
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr02g06080
Nbe.v1.1.chr02g06080.1
Nbe.v1.s00090g06080
Nbe.v1.1.chr02:129834901-129835215
-
Niben101Scf01399g00018.1
hypothetical protein
NULL
Nbe.v1.1.chr02g12110
Nbe.v1.1.chr02g12110.1
Nbe.v1.s00090g12110
Nbe.v1.1.chr02:117049842-117053791
+
Niben101Scf01785g10011.1
Leucine-rich receptor-like protein kinase family protein
NULL
Nbe.v1.1.chr07g05220
Nbe.v1.1.chr07g05220.1
Nbe.v1.s00100g05220
Nbe.v1.1.chr07:124064340-124074370
-
Niben101Scf01350g03009.1
D-3-phosphoglycerate dehydrogenase
D-3-phosphoglycerate dehydrogenase
Nbe.v1.1.chr07g33380
Nbe.v1.1.chr07g33380.1
Nbe.v1.s00100g33380
Nbe.v1.1.chr07:13881477-13882346
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr18g01540
Nbe.v1.1.chr18g01540.1
Nbe.v1.s00110g01540
Nbe.v1.1.chr18:137112326-137112697
+
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr18g37520
Nbe.v1.1.chr18g37520.1
Nbe.v1.s00110g37520
Nbe.v1.1.chr18:15190878-15195021
+
RNA binding / RNA-directed DNA polymerase
RNA binding;RNA-directed DNA polymerases
Nbe.v1.1.chr13g06930
Nbe.v1.1.chr13g06930.1
Nbe.v1.s00120g06930
Nbe.v1.1.chr13:23752701-23753183
+
N-acetyl-l-glutamate kinase
N-acetyl-l-glutamate kinase
Nbe.v1.1.chr13g09770
Nbe.v1.1.chr13g09770.1
Nbe.v1.s00120g09770
Nbe.v1.1.chr13:31050638-31051462
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr13g44090
Nbe.v1.1.chr13g44090.1
Nbe.v1.s00120g44090
Nbe.v1.1.chr13:125104637-125106993
+
Vps51/Vps67 family (components of vesicular transport) protein
Vps51/Vps67 family (components of vesicular transport) protein
Nbe.v1.1.chr04g23940
Nbe.v1.1.chr04g23940.1
Nbe.v1.s00130g23940
Nbe.v1.1.chr04:34237331-34239028
-
Niben101Scf02291g04002.1
SCARECROW-like 1
SCARECROW-like 1
Nbe.v1.1.chr04g31190
Nbe.v1.1.chr04g31190.1
Nbe.v1.s00130g31190
Nbe.v1.1.chr04:10385495-10387442
-
Niben101Scf03861g01001.1
Peroxidase superfamily protein
Peroxidase superfamily protein
Nbe.v1.1.chr04g32310
Nbe.v1.1.chr04g32310.1
Nbe.v1.s00130g32310
Nbe.v1.1.chr04:7592086-7593219
-
Niben101Ctg12907g00001.1
Disease resistance-responsive (dirigent-like protein) family protein
Disease resistance-responsive (dirigent-like protein) family protein
Nbe.v1.1.chr04g32320
Nbe.v1.1.chr04g32320.1
Nbe.v1.s00130g32320
Nbe.v1.1.chr04:7585304-7586437
-
Niben101Ctg12907g00001.1
Disease resistance-responsive (dirigent-like protein) family protein
Disease resistance-responsive (dirigent-like protein) family protein
Nbe.v1.1.chr03g19830
Nbe.v1.1.chr03g19830.1
Nbe.v1.s00150g19830
Nbe.v1.1.chr03:72920437-72924471
+
Niben101Scf01350g03009.1
D-3-phosphoglycerate dehydrogenase
D-3-phosphoglycerate dehydrogenase
Nbe.v1.1.chr01g17640
Nbe.v1.1.chr01g17640.1
Nbe.v1.s00160g17640
Nbe.v1.1.chr01:69727803-69730028
+
Niben101Scf06080g01006.1
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
NULL
Nbe.v1.1.chr01g30510
Nbe.v1.1.chr01g30510.1
Nbe.v1.s00160g30510
Nbe.v1.1.chr01:35661756-35664163
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr01g46230
Nbe.v1.1.chr01g46230.1
Nbe.v1.s00160g46230
Nbe.v1.1.chr01:18153-18470
-
Pentatricopeptide repeat (PPR) superfamily protein
Pentatricopeptide repeat (PPR) superfamily protein
Nbe.v1.1.chr11g14480
Nbe.v1.1.chr11g14480.1
Nbe.v1.s00170g14480
Nbe.v1.1.chr11:91697664-91697975
-
Calcineurin-like metallo-phosphoesterase superfamily protein
Calcineurin-like metallo-phosphoesterase superfamily protein
Nbe.v1.1.chr11g29310
Nbe.v1.1.chr11g29310.1
Nbe.v1.s00170g29310
Nbe.v1.1.chr11:45270775-45288766
+
Niben101Scf03375g00004.1
scramblase-like protein
scramblase-related
Nbe.v1.1.chr16g01440
Nbe.v1.1.chr16g01440.1
Nbe.v1.s00180g01440
Nbe.v1.1.chr16:73044180-73069820
-
Niben101Scf03923g10005.1
BEACH-DOMAIN HOMOLOG A1
NULL
Nbe.v1.1.chr16g10210
Nbe.v1.1.chr16g10210.1
Nbe.v1.s00180g10210
Nbe.v1.1.chr16:107036581-107036895
-
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr16g21780
Nbe.v1.1.chr16g21780.1
Nbe.v1.s00180g21780
Nbe.v1.1.chr16:151243632-151243901
-
RING/U-box superfamily protein
RING/U-box superfamily protein
Nbe.v1.1.chr15g02260
Nbe.v1.1.chr15g02260.1
Nbe.v1.s00190g02260
Nbe.v1.1.chr15:170199347-170199697
-
peroxidase superfamily protein
Peroxidase superfamily protein
Nbe.v1.1.chr15g04720
Nbe.v1.1.chr15g04720.1
Nbe.v1.s00190g04720
Nbe.v1.1.chr15:163292234-163292974
-
Niben101Scf02877g06002.1
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr15g10790
Nbe.v1.1.chr15g10790.1
Nbe.v1.s00190g10790
Nbe.v1.1.chr15:140494862-140495218
-
Adenine nucleotide alpha hydrolases-like superfamily protein
Adenine nucleotide alpha hydrolases-like superfamily protein
Nbe.v1.1.chr16g39460
Nbe.v1.1.chr16g39460.1
Nbe.v1.s00200g08050
Nbe.v1.1.chr16:21167767-21168096
-
CBL-interacting protein kinase 18
CBL-interacting protein kinase 18
Nbe.v1.1.chr16g44000
Nbe.v1.1.chr16g44000.1
Nbe.v1.s00200g12590
Nbe.v1.1.chr16:33812604-33815473
+
Niben101Scf04216g06004.1
vascular related NAC-domain protein 7
NULL
Nbe.v1.1.chr15g34000
Nbe.v1.1.chr15g34000.1
Nbe.v1.s00210g01650
Nbe.v1.1.chr15:61340602-61342229
-
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein