N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 59

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g08360
Nbe.v1.1.chr17g08360.1
Nbe.v1.s00010g08360
Nbe.v1.1.chr17:162757448-162763951
-
Niben101Scf12919g00032.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr17g24360
Nbe.v1.1.chr17g24360.1
Nbe.v1.s00010g24360
Nbe.v1.1.chr17:102944310-102953923
-
Niben101Scf02044g10001.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Nbe.v1.1.chr06g14210
Nbe.v1.1.chr06g14210.1
Nbe.v1.s00020g14210
Nbe.v1.1.chr06:104342728-104354249
-
Niben101Scf01912g00006.1
like SEX4 1
like SEX4 1
Nbe.v1.1.chr06g25740
Nbe.v1.1.chr06g25740.1
Nbe.v1.s00020g25740
Nbe.v1.1.chr06:60566802-60567125
-
Ribonuclease III family protein
Ribonuclease III family protein
Nbe.v1.1.chr06g26290
Nbe.v1.1.chr06g26290.1
Nbe.v1.s00020g26290
Nbe.v1.1.chr06:58576100-58584623
+
Niben101Scf09119g00007.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr06g42090
Nbe.v1.1.chr06g42090.1
Nbe.v1.s00020g42090
Nbe.v1.1.chr06:1751011-1756560
-
Niben101Scf07123g00019.1
5'-AMP-activated protein kinase beta-2 subunit protein
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr05g23000
Nbe.v1.1.chr05g23000.1
Nbe.v1.s00030g23000
Nbe.v1.1.chr05:79026706-79060036
-
Niben101Scf07673g03005.1
NOL1/NOP2/sun family protein
NOL1/NOP2/sun family protein
Nbe.v1.1.chr05g23550
Nbe.v1.1.chr05g23550.1
Nbe.v1.s00030g23550
Nbe.v1.1.chr05:81515086-81518692
+
Niben101Scf04650g01008.1
SNF1-related protein kinase regulatory subunit beta-2
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr05g31920
Nbe.v1.1.chr05g31920.1
Nbe.v1.s00030g31920
Nbe.v1.1.chr05:114675022-114678044
+
Niben101Scf02026g02001.1
O-methyltransferase 1
O-methyltransferase 1
Nbe.v1.1.chr05g32320
Nbe.v1.1.chr05g32320.1
Nbe.v1.s00030g32320
Nbe.v1.1.chr05:116490338-116491364
-
replication factor C 2
replication factor C 2
Nbe.v1.1.chr05g39960
Nbe.v1.1.chr05g39960.1
Nbe.v1.s00030g39960
Nbe.v1.1.chr05:149318148-149322792
-
Niben101Scf08266g00005.1
SNF1-related protein kinase regulatory subunit beta-2
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr09g11490
Nbe.v1.1.chr09g11490.1
Nbe.v1.s00040g11490
Nbe.v1.1.chr09:110052627-110060479
-
Niben101Scf01295g02004.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr09g25780
Nbe.v1.1.chr09g25780.1
Nbe.v1.s00040g25780
Nbe.v1.1.chr09:62622435-62623604
-
Niben101Scf03877g00018.1
F-box and associated interaction domains-containing protein
NULL
Nbe.v1.1.chr10g19030
Nbe.v1.1.chr10g19030.1
Nbe.v1.s00050g19030
Nbe.v1.1.chr10:65891190-65908092
+
Niben101Scf01695g01017.1
SNF1-related protein kinase regulatory subunit beta-2
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr10g34780
Nbe.v1.1.chr10g34780.1
Nbe.v1.s00050g34780
Nbe.v1.1.chr10:119341007-119343981
-
Niben101Scf00700g09004.1
O-methyltransferase 1
O-methyltransferase 1
Nbe.v1.1.chr10g34790
Nbe.v1.1.chr10g34790.1
Nbe.v1.s00050g34790
Nbe.v1.1.chr10:119430313-119440335
+
Niben101Scf00700g09004.1
O-methyltransferase 1
O-methyltransferase 1
Nbe.v1.1.chr19g01160
Nbe.v1.1.chr19g01160.1
Nbe.v1.s00060g01160
Nbe.v1.1.chr19:139260465-139272929
+
Niben101Scf00797g17008.1
5'-AMP-activated protein kinase beta-2 subunit protein
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr19g33320
Nbe.v1.1.chr19g33320.1
Nbe.v1.s00060g33320
Nbe.v1.1.chr19:32174945-32175426
+
beta-1%2C3-glucanase 1
beta-1,3-glucanase 1
Nbe.v1.1.chr19g35820
Nbe.v1.1.chr19g35820.1
Nbe.v1.s00060g35820
Nbe.v1.1.chr19:25814191-25815309
-
Niben101Scf04765g01002.1
Tetraspanin family protein
Tetraspanin family protein
Nbe.v1.1.chr19g38520
Nbe.v1.1.chr19g38520.1
Nbe.v1.s00060g38520
Nbe.v1.1.chr19:18773280-18777496
-
Niben101Scf07261g01014.1
trehalose-phosphatase/synthase 7
NULL
Nbe.v1.1.chr12g05800
Nbe.v1.1.chr12g05800.1
Nbe.v1.s00070g05800
Nbe.v1.1.chr12:121482050-121498096
-
Niben101Scf05135g06002.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr12g07970
Nbe.v1.1.chr12g07970.1
Nbe.v1.s00070g07970
Nbe.v1.1.chr12:114512758-114513579
+
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
NULL
Nbe.v1.1.chr12g19600
Nbe.v1.1.chr12g19600.1
Nbe.v1.s00070g19600
Nbe.v1.1.chr12:73613040-73626088
-
Niben101Scf03129g02009.1
SNF1-related protein kinase regulatory subunit beta-2
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr12g33870
Nbe.v1.1.chr12g33870.1
Nbe.v1.s00070g33870
Nbe.v1.1.chr12:32178054-32180456
-
Niben101Scf03009g05004.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr08g21920
Nbe.v1.1.chr08g21920.1
Nbe.v1.s00080g21920
Nbe.v1.1.chr08:78747994-78751720
+
Niben101Scf02439g00030.1
5'-AMP-activated protein kinase-like protein
5'-AMP-activated protein kinase-related
Nbe.v1.1.chr08g32180
Nbe.v1.1.chr08g32180.1
Nbe.v1.s00080g32180
Nbe.v1.1.chr08:116391022-116393917
-
Niben101Scf07590g06001.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Nbe.v1.1.chr02g08440
Nbe.v1.1.chr02g08440.1
Nbe.v1.s00090g08440
Nbe.v1.1.chr02:124782454-124783212
+
Niben101Scf04765g01002.1
Tetraspanin family protein
Tetraspanin family protein
Nbe.v1.1.chr02g10850
Nbe.v1.1.chr02g10850.1
Nbe.v1.s00090g10850
Nbe.v1.1.chr02:119547957-119551849
-
Niben101Scf07261g01014.1
trehalose-phosphatase/synthase 7
NULL
Nbe.v1.1.chr02g19550
Nbe.v1.1.chr02g19550.1
Nbe.v1.s00090g19550
Nbe.v1.1.chr02:99282738-99285152
-
No description
Nbe.v1.1.chr02g19920
Nbe.v1.1.chr02g19920.1
Nbe.v1.s00090g19920
Nbe.v1.1.chr02:98279140-98297337
-
Niben101Scf00069g14019.1
PROTEIN TARGETING TO STARCH (PTST)
NULL
Nbe.v1.1.chr02g23700
Nbe.v1.1.chr02g23700.1
Nbe.v1.s00090g23700
Nbe.v1.1.chr02:87347013-87359289
-
Niben101Scf00280g01006.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr02g31350
Nbe.v1.1.chr02g31350.1
Nbe.v1.s00090g31350
Nbe.v1.1.chr02:59691653-59692953
-
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr02g32340
Nbe.v1.1.chr02g32340.1
Nbe.v1.s00090g32340
Nbe.v1.1.chr02:54903310-54909238
+
Niben101Scf07444g00002.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr07g17610
Nbe.v1.1.chr07g17610.1
Nbe.v1.s00100g17610
Nbe.v1.1.chr07:71594427-71599441
-
Niben101Scf01521g08010.1
5'-AMP-activated protein kinase-like protein
5'-AMP-activated protein kinase-related
Nbe.v1.1.chr18g27650
Nbe.v1.1.chr18g27650.1
Nbe.v1.s00110g27650
Nbe.v1.1.chr18:47342667-47345941
-
Niben101Scf02439g00030.1
5'-AMP-activated protein kinase-like protein
5'-AMP-activated protein kinase-related
Nbe.v1.1.chr18g36700
Nbe.v1.1.chr18g36700.1
Nbe.v1.s00110g36700
Nbe.v1.1.chr18:18338686-18339794
+
Niben101Scf05697g05017.1
Transducin/WD40 repeat-like superfamily protein
Transducin/WD40 repeat-like superfamily protein
Nbe.v1.1.chr13g00530
Nbe.v1.1.chr13g00530.1
Nbe.v1.s00120g00530
Nbe.v1.1.chr13:1281418-1287607
-
Niben101Scf01635g05004.1
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr13g25230
Nbe.v1.1.chr13g25230.1
Nbe.v1.s00120g25230
Nbe.v1.1.chr13:76655811-76660887
+
Niben101Scf05821g01013.1
DHHC-type zinc finger family protein
DHHC-type zinc finger family protein
Nbe.v1.1.chr13g40830
Nbe.v1.1.chr13g40830.1
Nbe.v1.s00120g40830
Nbe.v1.1.chr13:114779600-114795361
-
Niben101Scf06709g02002.1
dual specificity protein phosphatase (DsPTP1) family protein
dual specificity protein phosphatase (DsPTP1) family protein
Nbe.v1.1.chr13g49070
Nbe.v1.1.chr13g49070.1
Nbe.v1.s00120g49070
Nbe.v1.1.chr13:140543922-140554383
-
Niben101Scf12330g02004.1
SNF1-related protein kinase regulatory subunit beta-2
5'-AMP-activated protein kinase beta-2 subunit protein
Nbe.v1.1.chr04g12900
Nbe.v1.1.chr04g12900.1
Nbe.v1.s00130g12900
Nbe.v1.1.chr04:73555987-73557399
+
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr14g04730
Nbe.v1.1.chr14g04730.1
Nbe.v1.s00140g04730
Nbe.v1.1.chr14:115837708-115838058
-
receptor like protein 1
NULL
Nbe.v1.1.chr14g15490
Nbe.v1.1.chr14g15490.1
Nbe.v1.s00140g15490
Nbe.v1.1.chr14:79383544-79391675
+
Niben101Scf02690g01006.1
villin 2
NULL
Nbe.v1.1.chr03g17340
Nbe.v1.1.chr03g17340.1
Nbe.v1.s00150g17340
Nbe.v1.1.chr03:64057529-64057897
+
DNA polymerase epsilon catalytic subunit
NULL
Nbe.v1.1.chr03g28850
Nbe.v1.1.chr03g28850.1
Nbe.v1.s00150g28850
Nbe.v1.1.chr03:99119917-99125020
+
Niben101Scf20828g00001.1
DHHC-type zinc finger family protein
DHHC-type zinc finger family protein
Nbe.v1.1.chr03g38600
Nbe.v1.1.chr03g38600.1
Nbe.v1.s00150g38600
Nbe.v1.1.chr03:120258823-120264321
+
Niben101Scf02581g01011.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr01g12930
Nbe.v1.1.chr01g12930.1
Nbe.v1.s00160g12930
Nbe.v1.1.chr01:86362025-86363473
+
No description
Nbe.v1.1.chr01g29810
Nbe.v1.1.chr01g29810.1
Nbe.v1.s00160g29810
Nbe.v1.1.chr01:37040957-37056928
-
Niben101Scf10144g00007.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr01g41650
Nbe.v1.1.chr01g41650.1
Nbe.v1.s00160g41650
Nbe.v1.1.chr01:9354012-9360845
+
Niben101Scf12919g00032.1
Cystathionine beta-synthase (CBS) family protein
Cystathionine beta-synthase (CBS) family protein
Nbe.v1.1.chr11g09590
Nbe.v1.1.chr11g09590.1
Nbe.v1.s00170g09590
Nbe.v1.1.chr11:104422950-104428036
-
Niben101Scf00503g02005.1
extra-large G-like protein%2C putative (DUF3133)
NULL
Nbe.v1.1.chr11g40880
Nbe.v1.1.chr11g40880.1
Nbe.v1.s00170g40880
Nbe.v1.1.chr11:3525018-3537717
+
Niben101Scf10144g00007.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr16g04560
Nbe.v1.1.chr16g04560.1
Nbe.v1.s00180g04560
Nbe.v1.1.chr16:83757616-83760560
+
Niben101Scf00349g06007.1
Homeodomain-like superfamily protein
Homeodomain-like superfamily protein
Nbe.v1.1.chr16g18070
Nbe.v1.1.chr16g18070.1
Nbe.v1.s00180g18070
Nbe.v1.1.chr16:136293350-136299499
-
Niben101Scf09052g03004.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr16g25510
Nbe.v1.1.chr16g25510.1
Nbe.v1.s00180g25510
Nbe.v1.1.chr16:161199667-161221291
+
Niben101Scf04249g00001.1
protein kinase family protein / protein phosphatase 2C ( PP2C) family protein
protein kinase family protein / protein phosphatase 2C ( PP2C) family protein
Nbe.v1.1.chr15g16050
Nbe.v1.1.chr15g16050.1
Nbe.v1.s00190g16050
Nbe.v1.1.chr15:125997711-126004044
+
Niben101Scf00279g01001.1
PIF1 helicase
PIF1 helicase
Nbe.v1.1.chr15g28270
Nbe.v1.1.chr15g28270.1
Nbe.v1.s00190g28270
Nbe.v1.1.chr15:77931229-77931615
+
No description
Nbe.v1.1.chr16g32310
Nbe.v1.1.chr16g32310.1
Nbe.v1.s00200g00900
Nbe.v1.1.chr16:2132020-2140662
-
Niben101Scf02562g04001.1
Inorganic H pyrophosphatase family protein
Inorganic H pyrophosphatase family protein
Nbe.v1.1.chr16g36870
Nbe.v1.1.chr16g36870.1
Nbe.v1.s00200g05460
Nbe.v1.1.chr16:13893842-13894680
+
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr15g34750
Nbe.v1.1.chr15g34750.1
Nbe.v1.s00210g02400
Nbe.v1.1.chr15:58401608-58414002
+
Niben101Scf03535g00001.1
5'-AMP-activated protein kinase-like protein
5'-AMP-activated protein kinase-related