N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 66

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g12600
Nbe.v1.1.chr17g12600.1
Nbe.v1.s00010g12600
Nbe.v1.1.chr17:148686647-148688298
-
Niben101Scf13773g00027.1
vacuolar iron transporter 1
vacuolar iron transporter 1
Nbe.v1.1.chr17g23460
Nbe.v1.1.chr17g23460.1
Nbe.v1.s00010g23460
Nbe.v1.1.chr17:105929258-105931189
-
Niben101Scf05082g02001.1
serine/arginine repetitive matrix protein
NULL
Nbe.v1.1.chr17g23680
Nbe.v1.1.chr17g23680.1
Nbe.v1.s00010g23680
Nbe.v1.1.chr17:105325909-105340432
+
Niben101Scf20652g01025.1
Coatomer%2C alpha subunit
Coatomer, alpha subunit
Nbe.v1.1.chr17g28920
Nbe.v1.1.chr17g28920.1
Nbe.v1.s00010g28920
Nbe.v1.1.chr17:87789620-87790072
+
root UVB sensitive protein (Protein of unknown function%2C DUF647)
Protein of unknown function, DUF647
Nbe.v1.1.chr17g30510
Nbe.v1.1.chr17g30510.1
Nbe.v1.s00010g30510
Nbe.v1.1.chr17:82573904-82601233
+
Niben101Scf05201g09003.1
Rho GTPase activation protein (RhoGAP) with PH domain-containing protein
Rho GTPase activation protein (RhoGAP) with PH domain
Nbe.v1.1.chr17g35050
Nbe.v1.1.chr17g35050.1
Nbe.v1.s00010g35050
Nbe.v1.1.chr17:63581000-63582962
-
Niben101Scf01464g02008.1
zinc ion binding / nucleic acid binding protein
zinc ion binding;nucleic acid binding
Nbe.v1.1.chr17g43020
Nbe.v1.1.chr17g43020.1
Nbe.v1.s00010g43020
Nbe.v1.1.chr17:33342197-33343579
+
Niben101Scf04944g04001.1
serine/arginine repetitive matrix protein
NULL
Nbe.v1.1.chr06g06310
Nbe.v1.1.chr06g06310.1
Nbe.v1.s00020g06310
Nbe.v1.1.chr06:133191793-133192146
+
Niben101Scf09071g01002.1
transmembrane protein
NULL
Nbe.v1.1.chr06g11430
Nbe.v1.1.chr06g11430.1
Nbe.v1.s00020g11430
Nbe.v1.1.chr06:114130423-114130899
+
Niben101Scf02626g00003.1
hypothetical protein
NULL
Nbe.v1.1.chr06g41460
Nbe.v1.1.chr06g41460.1
Nbe.v1.s00020g41460
Nbe.v1.1.chr06:3175123-3175380
+
Niben101Scf05231g00015.1
hypothetical protein
NULL
Nbe.v1.1.chr05g02170
Nbe.v1.1.chr05g02170.1
Nbe.v1.s00030g02170
Nbe.v1.1.chr05:7765341-7767979
-
cytochrome P450%2C family 711%2C subfamily A%2C polypeptide 1
cytochrome P450, family 711, subfamily A, polypeptide 1
Nbe.v1.1.chr05g15060
Nbe.v1.1.chr05g15060.1
Nbe.v1.s00030g15060
Nbe.v1.1.chr05:50944932-50948830
-
Niben101Scf01983g10002.1
integral membrane protein (Protein of unknown function DUF92%2C transmembrane)
Protein of unknown function DUF92, transmembrane
Nbe.v1.1.chr05g27060
Nbe.v1.1.chr05g27060.1
Nbe.v1.s00030g27060
Nbe.v1.1.chr05:95229078-95232464
+
No description
Nbe.v1.1.chr05g29630
Nbe.v1.1.chr05g29630.1
Nbe.v1.s00030g29630
Nbe.v1.1.chr05:105972419-105973699
-
Niben101Scf02869g02008.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr05g38970
Nbe.v1.1.chr05g38970.1
Nbe.v1.s00030g38970
Nbe.v1.1.chr05:146403592-146406299
+
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr09g12220
Nbe.v1.1.chr09g12220.1
Nbe.v1.s00040g12220
Nbe.v1.1.chr09:107253764-107254240
-
Niben101Scf10524g02015.1
hypothetical protein
NULL
Nbe.v1.1.chr09g25730
Nbe.v1.1.chr09g25730.1
Nbe.v1.s00040g25730
Nbe.v1.1.chr09:62900123-62919398
+
Niben101Scf06249g02001.1
origin recognition complex subunit 3
origin recognition complex subunit 3
Nbe.v1.1.chr10g20010
Nbe.v1.1.chr10g20010.1
Nbe.v1.s00050g20010
Nbe.v1.1.chr10:69028604-69029869
+
No description
Nbe.v1.1.chr10g26260
Nbe.v1.1.chr10g26260.1
Nbe.v1.s00050g26260
Nbe.v1.1.chr10:88197543-88202195
-
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr10g30420
Nbe.v1.1.chr10g30420.1
Nbe.v1.s00050g30420
Nbe.v1.1.chr10:103127743-103129101
-
Niben101Scf01545g01003.1
serine/arginine repetitive matrix protein
NULL
Nbe.v1.1.chr10g32570
Nbe.v1.1.chr10g32570.1
Nbe.v1.s00050g32570
Nbe.v1.1.chr10:110508392-110512210
-
Niben101Scf01779g00009.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Nbe.v1.1.chr10g34800
Nbe.v1.1.chr10g34800.1
Nbe.v1.s00050g34800
Nbe.v1.1.chr10:119449440-119450351
-
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr19g03940
Nbe.v1.1.chr19g03940.1
Nbe.v1.s00060g03940
Nbe.v1.1.chr19:130343498-130345378
+
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr19g05290
Nbe.v1.1.chr19g05290.1
Nbe.v1.s00060g05290
Nbe.v1.1.chr19:123716054-123716536
+
Niben101Ctg14811g00003.1
hypothetical protein
NULL
Nbe.v1.1.chr19g15310
Nbe.v1.1.chr19g15310.1
Nbe.v1.s00060g15310
Nbe.v1.1.chr19:87471417-87473835
+
Niben101Scf06482g02003.1
Barwin-like endoglucanases superfamily protein
Barwin-like endoglucanases superfamily protein
Nbe.v1.1.chr12g00910
Nbe.v1.1.chr12g00910.1
Nbe.v1.s00070g00910
Nbe.v1.1.chr12:141376318-141386266
+
Niben101Scf23481g00004.1
Splicing factor%2C CC1-like protein
Splicing factor, CC1-like
Nbe.v1.1.chr12g20140
Nbe.v1.1.chr12g20140.1
Nbe.v1.s00070g20140
Nbe.v1.1.chr12:72017925-72030074
-
Niben101Scf13455g00004.1
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr12g24330
Nbe.v1.1.chr12g24330.1
Nbe.v1.s00070g24330
Nbe.v1.1.chr12:59748595-59750689
+
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr12g30360
Nbe.v1.1.chr12g30360.1
Nbe.v1.s00070g30360
Nbe.v1.1.chr12:42925227-42933040
+
Niben101Scf07863g00013.1
RNA polymerase II large subunit
NULL
Nbe.v1.1.chr12g33390
Nbe.v1.1.chr12g33390.1
Nbe.v1.s00070g33390
Nbe.v1.1.chr12:33758798-33762544
+
Niben101Scf07817g02001.1
cytochrome P450%2C family 76%2C subfamily C%2C polypeptide 4
cytochrome P450, family 76, subfamily C, polypeptide 4
Nbe.v1.1.chr08g02450
Nbe.v1.1.chr08g02450.1
Nbe.v1.s00080g02450
Nbe.v1.1.chr08:7820305-7828460
-
Niben101Scf02688g01025.1
AMP-dependent synthetase and ligase family protein
AMP-dependent synthetase and ligase family protein
Nbe.v1.1.chr08g25510
Nbe.v1.1.chr08g25510.1
Nbe.v1.s00080g25510
Nbe.v1.1.chr08:91230788-91232191
-
Niben101Scf04187g01002.1
UDP-Glycosyltransferase superfamily protein
UDP-Glycosyltransferase superfamily protein
Nbe.v1.1.chr08g39060
Nbe.v1.1.chr08g39060.1
Nbe.v1.s00080g39060
Nbe.v1.1.chr08:140475160-140476425
+
Niben101Scf03224g00016.1
transcriptional regulator of RNA polII%2C SAGA%2C subunit
NULL
Nbe.v1.1.chr02g01170
Nbe.v1.1.chr02g01170.1
Nbe.v1.s00090g01170
Nbe.v1.1.chr02:140658317-140659603
+
Niben101Scf00046g05001.1
RNA-binding (RRM/RBD/RNP motifs) family protein
NULL
Nbe.v1.1.chr02g15950
Nbe.v1.1.chr02g15950.1
Nbe.v1.s00090g15950
Nbe.v1.1.chr02:108878978-108880399
+
No description
Nbe.v1.1.chr02g16060
Nbe.v1.1.chr02g16060.1
Nbe.v1.s00090g16060
Nbe.v1.1.chr02:108638881-108646789
+
Niben101Scf07863g00013.1
RNA polymerase II large subunit
NULL
Nbe.v1.1.chr02g22520
Nbe.v1.1.chr02g22520.1
Nbe.v1.s00090g22520
Nbe.v1.1.chr02:90963677-90968314
-
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr02g44260
Nbe.v1.1.chr02g44260.1
Nbe.v1.s00090g44260
Nbe.v1.1.chr02:1763131-1775325
-
Niben101Scf05492g00001.1
ABC2 homolog 13
ABC2 homolog 13
Nbe.v1.1.chr07g23710
Nbe.v1.1.chr07g23710.1
Nbe.v1.s00100g23710
Nbe.v1.1.chr07:50526567-50527541
+
Niben101Scf03659g09002.1
oxidoreductases%2C acting on NADH or NADPH
oxidoreductases, acting on NADH or NADPH
Nbe.v1.1.chr07g32830
Nbe.v1.1.chr07g32830.1
Nbe.v1.s00100g32830
Nbe.v1.1.chr07:15153914-15154885
+
hypothetical protein
NULL
Nbe.v1.1.chr18g04330
Nbe.v1.1.chr18g04330.1
Nbe.v1.s00110g04330
Nbe.v1.1.chr18:128150519-128155588
+
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr18g05880
Nbe.v1.1.chr18g05880.1
Nbe.v1.s00110g05880
Nbe.v1.1.chr18:123458797-123460660
-
hypothetical protein
NULL
Nbe.v1.1.chr18g21400
Nbe.v1.1.chr18g21400.1
Nbe.v1.s00110g21400
Nbe.v1.1.chr18:68797265-68800471
+
Niben101Scf02077g00003.1
ARM repeat superfamily protein
NULL
Nbe.v1.1.chr18g34690
Nbe.v1.1.chr18g34690.1
Nbe.v1.s00110g34690
Nbe.v1.1.chr18:25890167-25894127
-
No description
Nbe.v1.1.chr04g03280
Nbe.v1.1.chr04g03280.1
Nbe.v1.s00130g03280
Nbe.v1.1.chr04:118829186-118829590
+
zinc finger FYVE domain protein
NULL
Nbe.v1.1.chr04g07010
Nbe.v1.1.chr04g07010.1
Nbe.v1.s00130g07010
Nbe.v1.1.chr04:99896578-99901646
-
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr04g11200
Nbe.v1.1.chr04g11200.1
Nbe.v1.s00130g11200
Nbe.v1.1.chr04:80870560-80871772
+
Niben101Scf04113g17015.1
oxidoreductases%2C acting on NADH or NADPH
oxidoreductases, acting on NADH or NADPH
Nbe.v1.1.chr04g18650
Nbe.v1.1.chr04g18650.1
Nbe.v1.s00130g18650
Nbe.v1.1.chr04:52817281-52819000
-
Niben101Scf04455g00010.1
hypothetical protein
NULL
Nbe.v1.1.chr14g17380
Nbe.v1.1.chr14g17380.1
Nbe.v1.s00140g17380
Nbe.v1.1.chr14:74865945-74870458
-
Niben101Scf04950g01016.1
Protein-tyrosine phosphatase-like%2C PTPLA
Protein-tyrosine phosphatase-like, PTPLA
Nbe.v1.1.chr14g26500
Nbe.v1.1.chr14g26500.1
Nbe.v1.s00140g26500
Nbe.v1.1.chr14:47639288-47643243
+
Niben101Scf07586g02002.1
transmembrane protein%2C putative (DUF1191)
Protein of unknown function (DUF1191)
Nbe.v1.1.chr03g18250
Nbe.v1.1.chr03g18250.1
Nbe.v1.s00150g18250
Nbe.v1.1.chr03:66987282-66990359
+
Niben101Scf01184g16001.1
cellulase 3
cellulase 3
Nbe.v1.1.chr03g39900
Nbe.v1.1.chr03g39900.1
Nbe.v1.s00150g39900
Nbe.v1.1.chr03:122882156-122883385
+
O-fucosyltransferase family protein
O-fucosyltransferase family protein
Nbe.v1.1.chr01g11460
Nbe.v1.1.chr01g11460.1
Nbe.v1.s00160g11460
Nbe.v1.1.chr01:92488634-92493701
-
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr01g33320
Nbe.v1.1.chr01g33320.1
Nbe.v1.s00160g33320
Nbe.v1.1.chr01:29130005-29131039
+
Niben101Scf05886g03008.1
serine/arginine repetitive matrix protein
NULL
Nbe.v1.1.chr01g34240
Nbe.v1.1.chr01g34240.1
Nbe.v1.s00160g34240
Nbe.v1.1.chr01:26825794-26830224
+
Niben101Scf05202g00004.1
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr11g03310
Nbe.v1.1.chr11g03310.1
Nbe.v1.s00170g03310
Nbe.v1.1.chr11:122603319-122609244
-
Niben101Scf04283g07009.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Nbe.v1.1.chr11g10560
Nbe.v1.1.chr11g10560.1
Nbe.v1.s00170g10560
Nbe.v1.1.chr11:101836425-101837486
-
Niben101Scf09620g02008.1
oxidoreductases%2C acting on NADH or NADPH
oxidoreductases, acting on NADH or NADPH
Nbe.v1.1.chr11g21430
Nbe.v1.1.chr11g21430.1
Nbe.v1.s00170g21430
Nbe.v1.1.chr11:73947628-73958117
+
Niben101Scf01005g06010.1
white-brown complex-like protein
white-brown complex homolog protein 11
Nbe.v1.1.chr11g41840
Nbe.v1.1.chr11g41840.1
Nbe.v1.s00170g41840
Nbe.v1.1.chr11:1320887-1321294
-
ubiquitin-conjugating enzyme 37
NULL
Nbe.v1.1.chr16g15610
Nbe.v1.1.chr16g15610.1
Nbe.v1.s00180g15610
Nbe.v1.1.chr16:126975999-126988381
+
Niben101Scf02996g03008.1
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr16g29870
Nbe.v1.1.chr16g29870.1
Nbe.v1.s00180g29870
Nbe.v1.1.chr16:176399845-176404423
-
Niben101Scf13185g02001.1
Immunoglobulin E-set superfamily protein
Immunoglobulin E-set superfamily protein
Nbe.v1.1.chr15g07300
Nbe.v1.1.chr15g07300.1
Nbe.v1.s00190g07300
Nbe.v1.1.chr15:153496950-153500321
+
Niben101Scf16585g02002.1
integral membrane protein (Protein of unknown function DUF92%2C transmembrane)
Protein of unknown function DUF92, transmembrane
Nbe.v1.1.chr15g10555
Nbe.v1.1.chr15g10555.1
Nbe.v1.s00190g10555
Nbe.v1.1.chr15:141761305-141761796
+
Niben101Scf05413g07001.1
BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER
BED zinc finger ;hAT family dimerisation domain
Nbe.v1.1.chr15g29750
Nbe.v1.1.chr15g29750.1
Nbe.v1.s00190g29750
Nbe.v1.1.chr15:73595878-73604671
+
Niben101Scf00491g04005.1
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr15g33710
Nbe.v1.1.chr15g33710.1
Nbe.v1.s00210g01360
Nbe.v1.1.chr15:62268388-62270673
-
Niben101Scf00350g04018.1
oxidoreductases%2C acting on NADH or NADPH
oxidoreductases, acting on NADH or NADPH
Nbe.v1.1.chr15g37100
Nbe.v1.1.chr15g37100.1
Nbe.v1.s00210g04750
Nbe.v1.1.chr15:50960542-50963526
+
No description