N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 52

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g07670
Nbe.v1.1.chr17g07670.1
Nbe.v1.s00010g07670
Nbe.v1.1.chr17:164699602-164700101
-
Niben101Scf00163g03001.1
subtilisin-like protease
NULL
Nbe.v1.1.chr17g11100
Nbe.v1.1.chr17g11100.1
Nbe.v1.s00010g11100
Nbe.v1.1.chr17:154050840-154053696
-
Phenazine biosynthesis PhzC/PhzF protein
Phenazine biosynthesis PhzC/PhzF protein
Nbe.v1.1.chr17g28870
Nbe.v1.1.chr17g28870.1
Nbe.v1.s00010g28870
Nbe.v1.1.chr17:87918668-87920341
+
Niben101Scf05078g08013.1
F-box protein 2
NULL
Nbe.v1.1.chr06g05570
Nbe.v1.1.chr06g05570.1
Nbe.v1.s00020g05570
Nbe.v1.1.chr06:135111625-135114423
-
Niben101Scf01090g05027.1
Rho termination factor
Rho termination factor
Nbe.v1.1.chr06g30330
Nbe.v1.1.chr06g30330.1
Nbe.v1.s00020g30330
Nbe.v1.1.chr06:44521526-44521807
+
NAD(P)-linked oxidoreductase superfamily protein
NAD(P)-linked oxidoreductase superfamily protein
Nbe.v1.1.chr06g42550
Nbe.v1.1.chr06g42550.1
Nbe.v1.s00020g42550
Nbe.v1.1.chr06:888406-892150
-
Niben101Scf04958g02011.1
Nse4%2C component of Smc5/6 DNA repair complex
Nse4, component of Smc5/6 DNA repair complex
Nbe.v1.1.chr05g12770
Nbe.v1.1.chr05g12770.1
Nbe.v1.s00030g12770
Nbe.v1.1.chr05:43536993-43569208
-
Niben101Scf02362g01007.1
HEAT/U-box domain-containing protein
NULL
Nbe.v1.1.chr05g13190
Nbe.v1.1.chr05g13190.1
Nbe.v1.s00030g13190
Nbe.v1.1.chr05:45151830-45163105
-
Niben101Scf06131g00002.1
Exocyst complex component SEC5
NULL
Nbe.v1.1.chr05g25630
Nbe.v1.1.chr05g25630.1
Nbe.v1.s00030g25630
Nbe.v1.1.chr05:89193144-89206881
+
Niben101Scf07304g02018.1
lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme
NULL
Nbe.v1.1.chr10g18790
Nbe.v1.1.chr10g18790.1
Nbe.v1.s00050g18790
Nbe.v1.1.chr10:65018639-65018965
-
Niben101Scf02066g05013.1
hypothetical protein
NULL
Nbe.v1.1.chr10g41220
Nbe.v1.1.chr10g41220.1
Nbe.v1.s00050g41220
Nbe.v1.1.chr10:140179557-140181245
+
RNA binding protein
NULL
Nbe.v1.1.chr19g09270
Nbe.v1.1.chr19g09270.1
Nbe.v1.s00060g09270
Nbe.v1.1.chr19:108219902-108244803
+
Niben101Scf02362g01007.1
HEAT/U-box domain-containing protein
NULL
Nbe.v1.1.chr12g08730
Nbe.v1.1.chr12g08730.1
Nbe.v1.s00070g08730
Nbe.v1.1.chr12:112041101-112044264
-
Niben101Scf01464g02008.1
Plant invertase/pectin methylesterase inhibitor superfamily
Plant invertase/pectin methylesterase inhibitor superfamily
Nbe.v1.1.chr12g15140
Nbe.v1.1.chr12g15140.1
Nbe.v1.s00070g15140
Nbe.v1.1.chr12:87780520-87781845
+
transmembrane protein
NULL
Nbe.v1.1.chr12g19320
Nbe.v1.1.chr12g19320.1
Nbe.v1.s00070g19320
Nbe.v1.1.chr12:74441004-74441315
+
Niben101Scf08782g04001.1
hypothetical protein
NULL
Nbe.v1.1.chr12g38090
Nbe.v1.1.chr12g38090.1
Nbe.v1.s00070g38090
Nbe.v1.1.chr12:18586303-18604291
-
Niben101Scf03282g02005.1
LSD1 zinc finger family protein
LSD1 zinc finger family protein
Nbe.v1.1.chr08g00010
Nbe.v1.1.chr08g00010.1
Nbe.v1.s00080g00010
Nbe.v1.1.chr08:68238-68477
-
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr08g30810
Nbe.v1.1.chr08g30810.1
Nbe.v1.s00080g30810
Nbe.v1.1.chr08:111369536-111371981
+
Niben101Scf37365g00006.1
Expp1 protein
NULL
Nbe.v1.1.chr08g38330
Nbe.v1.1.chr08g38330.1
Nbe.v1.s00080g38330
Nbe.v1.1.chr08:138545284-138545559
+
global transcription factor group B1
NULL
Nbe.v1.1.chr08g38370
Nbe.v1.1.chr08g38370.1
Nbe.v1.s00080g38370
Nbe.v1.1.chr08:138612301-138635348
+
Niben101Scf06869g02020.1
exocyst complex component sec5
exocyst complex component sec5
Nbe.v1.1.chr02g27350
Nbe.v1.1.chr02g27350.1
Nbe.v1.s00090g27350
Nbe.v1.1.chr02:74376800-74389654
-
Niben101Scf03729g00011.1
LSD1 zinc finger family protein
LSD1 zinc finger family protein
Nbe.v1.1.chr02g30100
Nbe.v1.1.chr02g30100.1
Nbe.v1.s00090g30100
Nbe.v1.1.chr02:64704774-64705708
+
Niben101Scf02155g01016.1
Plant protein 1589 of unknown function
Plant protein 1589 of unknown function
Nbe.v1.1.chr02g36760
Nbe.v1.1.chr02g36760.1
Nbe.v1.s00090g36760
Nbe.v1.1.chr02:32769584-32770624
+
No description
Nbe.v1.1.chr07g00290
Nbe.v1.1.chr07g00290.1
Nbe.v1.s00100g00290
Nbe.v1.1.chr07:141081301-141081861
-
Niben101Scf01464g02008.1
Defensin-like (DEFL) family protein
Defensin-like (DEFL) family protein
Nbe.v1.1.chr07g02270
Nbe.v1.1.chr07g02270.1
Nbe.v1.s00100g02270
Nbe.v1.1.chr07:136669698-136684830
+
Niben101Scf06848g10002.1
Nuclear transport factor 2 (NTF2) family protein
Nuclear transport factor 2 (NTF2) family protein
Nbe.v1.1.chr07g15460
Nbe.v1.1.chr07g15460.1
Nbe.v1.s00100g15460
Nbe.v1.1.chr07:78200562-78202235
+
Niben101Scf01383g07028.1
F-box protein 2
NULL
Nbe.v1.1.chr07g23090
Nbe.v1.1.chr07g23090.1
Nbe.v1.s00100g23090
Nbe.v1.1.chr07:52775030-52782398
+
Niben101Scf02461g04014.1
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Nbe.v1.1.chr18g08480
Nbe.v1.1.chr18g08480.1
Nbe.v1.s00110g08480
Nbe.v1.1.chr18:114444522-114447029
+
Niben101Scf08687g00004.1
Auxin-responsive GH3 family protein
Auxin-responsive GH3 family protein
Nbe.v1.1.chr18g21550
Nbe.v1.1.chr18g21550.1
Nbe.v1.s00110g21550
Nbe.v1.1.chr18:68140805-68141995
+
Niben101Scf02077g07002.1
similar to RCD one 2
similar to RCD one 2
Nbe.v1.1.chr13g14080
Nbe.v1.1.chr13g14080.1
Nbe.v1.s00120g14080
Nbe.v1.1.chr13:40837967-40838576
-
hypothetical protein
NULL
Nbe.v1.1.chr13g16700
Nbe.v1.1.chr13g16700.1
Nbe.v1.s00120g16700
Nbe.v1.1.chr13:52536571-52565684
+
Niben101Scf03809g00009.1
ARM repeat superfamily protein
NULL
Nbe.v1.1.chr13g38720
Nbe.v1.1.chr13g38720.1
Nbe.v1.s00120g38720
Nbe.v1.1.chr13:109167219-109169587
-
Niben101Scf09510g00008.1
Homeodomain-like transcriptional regulator
Homeodomain-like transcriptional regulator
Nbe.v1.1.chr04g11320
Nbe.v1.1.chr04g11320.1
Nbe.v1.s00130g11320
Nbe.v1.1.chr04:80254863-80265225
+
Niben101Scf04655g04018.1
HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Nbe.v1.1.chr04g25100
Nbe.v1.1.chr04g25100.1
Nbe.v1.s00130g25100
Nbe.v1.1.chr04:30206114-30206374
-
SWI-SNF-related chromatin binding protein
SWI-SNF-related chromatin binding protein
Nbe.v1.1.chr14g11210
Nbe.v1.1.chr14g11210.1
Nbe.v1.s00140g11210
Nbe.v1.1.chr14:94079688-94080563
+
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr14g17100
Nbe.v1.1.chr14g17100.1
Nbe.v1.s00140g17100
Nbe.v1.1.chr14:75659734-75662996
-
Niben101Scf07402g01002.1
Transducin/WD40 repeat-like superfamily protein
NULL
Nbe.v1.1.chr14g29530
Nbe.v1.1.chr14g29530.1
Nbe.v1.s00140g29530
Nbe.v1.1.chr14:38516158-38517779
-
Niben101Scf00304g04002.1
F-box protein 2
NULL
Nbe.v1.1.chr14g29820
Nbe.v1.1.chr14g29820.1
Nbe.v1.s00140g29820
Nbe.v1.1.chr14:37888032-37893874
-
Niben101Scf07350g00008.1
isovaleryl-CoA-dehydrogenase
isovaleryl-CoA-dehydrogenase
Nbe.v1.1.chr14g33150
Nbe.v1.1.chr14g33150.1
Nbe.v1.s00140g33150
Nbe.v1.1.chr14:28281714-28283912
+
Niben101Scf06162g01002.1
MuDR family transposase
NULL
Nbe.v1.1.chr14g34850
Nbe.v1.1.chr14g34850.1
Nbe.v1.s00140g34850
Nbe.v1.1.chr14:22078948-22079496
+
Pectin lyase-like superfamily protein
Pectin lyase-like superfamily protein
Nbe.v1.1.chr01g11070
Nbe.v1.1.chr01g11070.1
Nbe.v1.s00160g11070
Nbe.v1.1.chr01:94218707-94219923
-
Niben101Scf04936g00001.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr01g11440
Nbe.v1.1.chr01g11440.1
Nbe.v1.s00160g11440
Nbe.v1.1.chr01:92553613-92553924
-
Niben101Scf01663g01004.1
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr01g42470
Nbe.v1.1.chr01g42470.1
Nbe.v1.s00160g42470
Nbe.v1.1.chr01:7846745-7847263
-
myosin heavy chain-like protein
NULL
Nbe.v1.1.chr11g21780
Nbe.v1.1.chr11g21780.1
Nbe.v1.s00170g21780
Nbe.v1.1.chr11:73371085-73373202
+
Niben101Scf01005g00014.1
Chaperone DnaJ-domain superfamily protein
NULL
Nbe.v1.1.chr11g28890
Nbe.v1.1.chr11g28890.1
Nbe.v1.s00170g28890
Nbe.v1.1.chr11:46859319-46860944
+
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr16g10170
Nbe.v1.1.chr16g10170.1
Nbe.v1.s00180g10170
Nbe.v1.1.chr16:107003839-107006458
+
Niben101Scf00453g03019.1
IQ-domain 12
NULL
Nbe.v1.1.chr16g13030
Nbe.v1.1.chr16g13030.1
Nbe.v1.s00180g13030
Nbe.v1.1.chr16:116657259-116657989
-
Niben101Scf02949g06001.1
Actin-like ATPase superfamily protein
Actin-like ATPase superfamily protein
Nbe.v1.1.chr16g18950
Nbe.v1.1.chr16g18950.1
Nbe.v1.s00180g18950
Nbe.v1.1.chr16:139989064-139997958
+
Niben101Scf12017g02001.1
transcription factor-like protein
NULL
Nbe.v1.1.chr15g33540
Nbe.v1.1.chr15g33540.1
Nbe.v1.s00210g01190
Nbe.v1.1.chr15:62639351-62656960
-
Niben101Scf04655g04018.1
HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Nbe.v1.1.chr15g39400
Nbe.v1.1.chr15g39400.1
Nbe.v1.s00210g07050
Nbe.v1.1.chr15:41873751-41881364
-
Niben101Scf04585g00006.1
Actin-like ATPase superfamily protein
Actin-like ATPase superfamily protein
Nbe.v1.1.chr15g49800
Nbe.v1.1.chr15g49800.1
Nbe.v1.s00210g17450
Nbe.v1.1.chr15:2059039-2070545
-
Niben101Scf12017g02001.1
transcription factor-like protein
NULL
Nbe.v1.1.chr15g49810
Nbe.v1.1.chr15g49810.1
Nbe.v1.s00210g17460
Nbe.v1.1.chr15:2014606-2017128
-
Niben101Scf12210g01011.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein