N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 50

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g22780
Nbe.v1.1.chr17g22780.1
Nbe.v1.s00010g22780
Nbe.v1.1.chr17:108083141-108117451
-
Niben101Scf01267g05006.1
pre-mRNA-processing protein 40A
pre-mRNA-processing protein 40A
Nbe.v1.1.chr17g38890
Nbe.v1.1.chr17g38890.1
Nbe.v1.s00010g38890
Nbe.v1.1.chr17:47111075-47151741
+
Niben101Scf08669g00008.1
myosin
myosin, putative
Nbe.v1.1.chr17g40350
Nbe.v1.1.chr17g40350.1
Nbe.v1.s00010g40350
Nbe.v1.1.chr17:42525653-42526498
+
Niben101Scf03839g12008.1
transmembrane protein
NULL
Nbe.v1.1.chr06g06120
Nbe.v1.1.chr06g06120.1
Nbe.v1.s00020g06120
Nbe.v1.1.chr06:133650814-133660545
+
Niben101Scf32746g01019.1
SET-domain containing protein lysine methyltransferase family protein
SET-domain containing protein lysine methyltransferase family protein
Nbe.v1.1.chr05g00200
Nbe.v1.1.chr05g00200.1
Nbe.v1.s00030g00200
Nbe.v1.1.chr05:994356-995120
-
Leucine-rich repeat (LRR) family protein
NULL
Nbe.v1.1.chr05g17810
Nbe.v1.1.chr05g17810.1
Nbe.v1.s00030g17810
Nbe.v1.1.chr05:61632521-61633066
-
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr05g24470
Nbe.v1.1.chr05g24470.1
Nbe.v1.s00030g24470
Nbe.v1.1.chr05:84791763-84793919
-
Niben101Scf00144g03009.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr05g29100
Nbe.v1.1.chr05g29100.1
Nbe.v1.s00030g29100
Nbe.v1.1.chr05:103649584-103652525
-
Niben101Scf03439g02001.1
Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Nbe.v1.1.chr09g21110
Nbe.v1.1.chr09g21110.1
Nbe.v1.s00040g21110
Nbe.v1.1.chr09:76988302-76994243
+
Niben101Scf08586g02005.1
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Nbe.v1.1.chr09g39020
Nbe.v1.1.chr09g39020.1
Nbe.v1.s00040g39020
Nbe.v1.1.chr09:15624078-15626733
+
Niben101Scf01823g00003.1
Iron-sulfur cluster biosynthesis family protein
Iron-sulphur cluster biosynthesis family protein
Nbe.v1.1.chr10g05130
Nbe.v1.1.chr10g05130.1
Nbe.v1.s00050g05130
Nbe.v1.1.chr10:14426694-14429753
+
Niben101Scf11891g01020.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr10g08540
Nbe.v1.1.chr10g08540.1
Nbe.v1.s00050g08540
Nbe.v1.1.chr10:26569382-26569978
+
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr10g19880
Nbe.v1.1.chr10g19880.1
Nbe.v1.s00050g19880
Nbe.v1.1.chr10:68443660-68445133
-
Niben101Scf39169g00001.1
homeobox protein 22
homeobox protein 22
Nbe.v1.1.chr10g38880
Nbe.v1.1.chr10g38880.1
Nbe.v1.s00050g38880
Nbe.v1.1.chr10:132204047-132204442
-
Niben101Scf04309g02001.1
Protein kinase superfamily protein
NULL
Nbe.v1.1.chr19g03210
Nbe.v1.1.chr19g03210.1
Nbe.v1.s00060g03210
Nbe.v1.1.chr19:133643538-133644284
-
Niben101Scf03488g12009.1
No description
Nbe.v1.1.chr19g27060
Nbe.v1.1.chr19g27060.1
Nbe.v1.s00060g27060
Nbe.v1.1.chr19:46867605-46879226
+
Niben101Scf02738g07004.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr19g27070
Nbe.v1.1.chr19g27070.1
Nbe.v1.s00060g27070
Nbe.v1.1.chr19:46850110-46850969
+
Niben101Scf02738g07004.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr12g08710
Nbe.v1.1.chr12g08710.1
Nbe.v1.s00070g08710
Nbe.v1.1.chr12:112083862-112084664
+
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr12g22295
Nbe.v1.1.chr12g22295.1
Nbe.v1.s00070g22295
Nbe.v1.1.chr12:66628421-66629628
-
Niben101Scf11364g00008.1
myb-like protein X
NULL
Nbe.v1.1.chr12g38690
Nbe.v1.1.chr12g38690.1
Nbe.v1.s00070g38690
Nbe.v1.1.chr12:16457005-16457394
+
Niben101Scf01281g07014.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr12g40980
Nbe.v1.1.chr12g40980.1
Nbe.v1.s00070g40980
Nbe.v1.1.chr12:9361628-9382459
+
Niben101Scf06590g06001.1
UDP-N-acetylglucosamine (UAA) transporter family
UDP-N-acetylglucosamine (UAA) transporter family
Nbe.v1.1.chr08g01660
Nbe.v1.1.chr08g01660.1
Nbe.v1.s00080g01660
Nbe.v1.1.chr08:5093882-5102661
-
Niben101Scf02062g08002.1
heavy metal atpase 5
heavy metal atpase 5
Nbe.v1.1.chr08g07080
Nbe.v1.1.chr08g07080.1
Nbe.v1.s00080g07080
Nbe.v1.1.chr08:24582525-24583732
-
Niben101Scf00938g01003.1
pyruvate dehydrogenase E1 alpha
pyruvate dehydrogenase E1 alpha
Nbe.v1.1.chr08g09020
Nbe.v1.1.chr08g09020.1
Nbe.v1.s00080g09020
Nbe.v1.1.chr08:32424620-32433473
+
Niben101Scf02623g00007.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr08g25480
Nbe.v1.1.chr08g25480.1
Nbe.v1.s00080g25480
Nbe.v1.1.chr08:91141197-91156529
-
Niben101Scf04187g00026.1
male gametophyte defective 3
male gametophyte defective 3
Nbe.v1.1.chr02g04600
Nbe.v1.1.chr02g04600.1
Nbe.v1.s00090g04600
Nbe.v1.1.chr02:133405472-133421902
-
Niben101Scf02738g07004.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr02g15630
Nbe.v1.1.chr02g15630.1
Nbe.v1.s00090g15630
Nbe.v1.1.chr02:109483057-109485310
-
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
NULL
Nbe.v1.1.chr07g05860
Nbe.v1.1.chr07g05860.1
Nbe.v1.s00100g05860
Nbe.v1.1.chr07:122073513-122083556
-
Niben101Scf02470g01008.1
Pentatricopeptide repeat (PPR) superfamily protein
Pentatricopeptide repeat (PPR) superfamily protein
Nbe.v1.1.chr07g16390
Nbe.v1.1.chr07g16390.1
Nbe.v1.s00100g16390
Nbe.v1.1.chr07:75438568-75438918
-
Niben101Scf11143g00010.1
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
NULL
Nbe.v1.1.chr07g30550
Nbe.v1.1.chr07g30550.1
Nbe.v1.s00100g30550
Nbe.v1.1.chr07:23453113-23511613
-
Niben101Scf08669g00008.1
myosin
myosin, putative
Nbe.v1.1.chr18g02140
Nbe.v1.1.chr18g02140.1
Nbe.v1.s00110g02140
Nbe.v1.1.chr18:135131774-135132268
+
Niben101Scf05002g03023.1
Transducin/WD40 repeat-like superfamily protein
Transducin/WD40 repeat-like superfamily protein
Nbe.v1.1.chr18g31520
Nbe.v1.1.chr18g31520.1
Nbe.v1.s00110g31520
Nbe.v1.1.chr18:35872498-35885816
+
Niben101Scf02824g03013.1
male gametophyte defective 3
male gametophyte defective 3
Nbe.v1.1.chr13g31600
Nbe.v1.1.chr13g31600.1
Nbe.v1.s00120g31600
Nbe.v1.1.chr13:91326065-91334610
-
Niben101Scf04219g01015.1
pumilio 5
NULL
Nbe.v1.1.chr14g08110
Nbe.v1.1.chr14g08110.1
Nbe.v1.s00140g08110
Nbe.v1.1.chr14:104881109-104881615
+
pre-mRNA-splicing factor ISY1-like protein
NULL
Nbe.v1.1.chr03g01380
Nbe.v1.1.chr03g01380.1
Nbe.v1.s00150g01380
Nbe.v1.1.chr03:3245536-3248950
+
Niben101Scf00870g06001.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr03g21120
Nbe.v1.1.chr03g21120.1
Nbe.v1.s00150g21120
Nbe.v1.1.chr03:77688643-77694386
+
Niben101Scf03739g06015.1
transcript elongation factor IIS
transcript elongation factor IIS
Nbe.v1.1.chr03g39650
Nbe.v1.1.chr03g39650.1
Nbe.v1.s00150g39650
Nbe.v1.1.chr03:122435689-122436886
-
Niben101Scf06998g01015.1
Ribosomal protein L10 family protein
Ribosomal protein L10 family protein
Nbe.v1.1.chr03g44300
Nbe.v1.1.chr03g44300.1
Nbe.v1.s00150g44300
Nbe.v1.1.chr03:132044110-132053698
+
Niben101Scf04219g01015.1
pumilio 5
NULL
Nbe.v1.1.chr01g11030
Nbe.v1.1.chr01g11030.1
Nbe.v1.s00160g11030
Nbe.v1.1.chr01:94422056-94428726
-
Niben101Scf04283g08013.1
MIRO-related GTP-ase 2
MIRO-related GTP-ase 2
Nbe.v1.1.chr01g14440
Nbe.v1.1.chr01g14440.1
Nbe.v1.s00160g14440
Nbe.v1.1.chr01:80112991-80119277
-
YELLOW STRIPE like 5
NULL
Nbe.v1.1.chr01g41460
Nbe.v1.1.chr01g41460.1
Nbe.v1.s00160g41460
Nbe.v1.1.chr01:9728687-9730396
-
Niben101Scf07563g00011.1
late embryogenesis abundant protein-related / LEA protein-like protein
NULL
Nbe.v1.1.chr11g36390
Nbe.v1.1.chr11g36390.1
Nbe.v1.s00170g36390
Nbe.v1.1.chr11:21321012-21321542
+
Auxin-responsive GH3 family protein
NULL
Nbe.v1.1.chr16g00800
Nbe.v1.1.chr16g00800.1
Nbe.v1.s00180g00800
Nbe.v1.1.chr16:70804514-70807828
-
Niben101Scf05955g00002.1
senescence-associated E3 ubiquitin ligase 1
NULL
Nbe.v1.1.chr16g22080
Nbe.v1.1.chr16g22080.1
Nbe.v1.s00180g22080
Nbe.v1.1.chr16:152239746-152240648
+
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr16g26110
Nbe.v1.1.chr16g26110.1
Nbe.v1.s00180g26110
Nbe.v1.1.chr16:163562087-163562617
+
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr15g21530
Nbe.v1.1.chr15g21530.1
Nbe.v1.s00190g21530
Nbe.v1.1.chr15:104435961-104436263
+
Niben101Scf11891g01020.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr15g27320
Nbe.v1.1.chr15g27320.1
Nbe.v1.s00190g27320
Nbe.v1.1.chr15:83506705-83514783
+
Niben101Scf00938g01003.1
DNA/RNA polymerases superfamily protein
DNA/RNA polymerases superfamily protein
Nbe.v1.1.chr16g40980
Nbe.v1.1.chr16g40980.1
Nbe.v1.s00200g09570
Nbe.v1.1.chr16:25328054-25343530
+
Niben101Scf05582g04010.1
Helicase/SANT-associated%2C DNA binding protein
NULL
Nbe.v1.1.chr16g47790
Nbe.v1.1.chr16g47790.1
Nbe.v1.s00200g16380
Nbe.v1.1.chr16:48189147-48190344
-
Niben101Scf03761g00013.1
Dof-type zinc finger DNA-binding family protein
NULL
Nbe.v1.1.chr15g42310
Nbe.v1.1.chr15g42310.1
Nbe.v1.s00210g09960
Nbe.v1.1.chr15:30125837-30130904
+
Root hair defective 3 GTP-binding protein (RHD3)
Root hair defective 3 GTP-binding protein (RHD3)