N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 53

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g02810
Nbe.v1.1.chr17g02810.1
Nbe.v1.s00010g02810
Nbe.v1.1.chr17:177922192-177926915
+
Niben101Scf06589g00008.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Nbe.v1.1.chr17g08990
Nbe.v1.1.chr17g08990.1
Nbe.v1.s00010g08990
Nbe.v1.1.chr17:160704094-160707395
+
Niben101Scf06823g02016.1
arabinogalactan protein 18
arabinogalactan protein 18
Nbe.v1.1.chr17g46730
Nbe.v1.1.chr17g46730.1
Nbe.v1.s00010g46730
Nbe.v1.1.chr17:19485496-19493422
+
Niben101Scf11103g01017.1
TCV-interacting protein
TCV-interacting protein
Nbe.v1.1.chr06g05490
Nbe.v1.1.chr06g05490.1
Nbe.v1.s00020g05490
Nbe.v1.1.chr06:135351444-135353093
+
Niben101Scf01090g04019.1
RmlC-like cupins superfamily protein
RmlC-like cupins superfamily protein
Nbe.v1.1.chr06g24670
Nbe.v1.1.chr06g24670.1
Nbe.v1.s00020g24670
Nbe.v1.1.chr06:64245536-64258350
-
Niben101Scf05323g02008.1
Zinc finger C-x8-C-x5-C-x3-H type family protein
Zinc finger C-x8-C-x5-C-x3-H type family protein
Nbe.v1.1.chr09g34010
Nbe.v1.1.chr09g34010.1
Nbe.v1.s00040g34010
Nbe.v1.1.chr09:33689896-33709678
-
Niben101Scf03375g02030.1
Transcription factor jumonji (jmjC) domain-containing protein
Transcription factor jumonji (jmjC) domain-containing protein
Nbe.v1.1.chr09g34520
Nbe.v1.1.chr09g34520.1
Nbe.v1.s00040g34520
Nbe.v1.1.chr09:31383570-31385505
-
Niben101Scf00751g06033.1
potassium transport 2/3
potassium transport 2/3
Nbe.v1.1.chr10g18540
Nbe.v1.1.chr10g18540.1
Nbe.v1.s00050g18540
Nbe.v1.1.chr10:64204937-64205654
+
Disease resistance protein (TIR-NBS-LRR class) family
Disease resistance protein (TIR-NBS-LRR class) family
Nbe.v1.1.chr10g32110
Nbe.v1.1.chr10g32110.1
Nbe.v1.s00050g32110
Nbe.v1.1.chr10:108983567-108984349
+
FORMS APLOID AND BINUCLEATE CELLS 1C
FORMS APLOID AND BINUCLEATE CELLS 1C
Nbe.v1.1.chr10g35670
Nbe.v1.1.chr10g35670.1
Nbe.v1.s00050g35670
Nbe.v1.1.chr10:123688429-123689325
-
Niben101Scf04666g00003.1
chitinase A
chitinase A
Nbe.v1.1.chr10g36990
Nbe.v1.1.chr10g36990.1
Nbe.v1.s00050g36990
Nbe.v1.1.chr10:127482823-127495091
-
Niben101Scf03093g00018.1
Serine/threonine-protein kinase Rio1
Serine/threonine-protein kinase Rio1
Nbe.v1.1.chr10g39670
Nbe.v1.1.chr10g39670.1
Nbe.v1.s00050g39670
Nbe.v1.1.chr10:135574552-135576128
+
Niben101Scf01464g02008.1
zinc knuckle protein
NULL
Nbe.v1.1.chr19g33250
Nbe.v1.1.chr19g33250.1
Nbe.v1.s00060g33250
Nbe.v1.1.chr19:32359479-32363300
+
Niben101Scf04817g00012.1
S-locus lectin protein kinase family protein
S-locus lectin protein kinase family protein
Nbe.v1.1.chr19g37900
Nbe.v1.1.chr19g37900.1
Nbe.v1.s00060g37900
Nbe.v1.1.chr19:20262610-20265226
-
Niben101Scf02336g00010.1
xylem bark cysteine peptidase 3
xylem bark cysteine peptidase 3
Nbe.v1.1.chr12g01490
Nbe.v1.1.chr12g01490.1
Nbe.v1.s00070g01490
Nbe.v1.1.chr12:139648101-139649141
+
Niben101Scf04731g11005.1
Fasciclin-like arabinogalactan family protein
Fasciclin-like arabinogalactan family protein
Nbe.v1.1.chr12g07200
Nbe.v1.1.chr12g07200.1
Nbe.v1.s00070g07200
Nbe.v1.1.chr12:117355395-117356062
-
Niben101Scf16613g04013.1
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr12g17560
Nbe.v1.1.chr12g17560.1
Nbe.v1.s00070g17560
Nbe.v1.1.chr12:79404362-79404961
-
Niben101Scf01481g02020.1
No description
Nbe.v1.1.chr12g30580
Nbe.v1.1.chr12g30580.1
Nbe.v1.s00070g30580
Nbe.v1.1.chr12:42389358-42394543
+
Niben101Ctg14272g00004.1
pre-rRNA-processing ESF1-like protein
NULL
Nbe.v1.1.chr12g30600
Nbe.v1.1.chr12g30600.1
Nbe.v1.s00070g30600
Nbe.v1.1.chr12:42370043-42375235
+
Niben101Ctg14272g00004.1
pre-rRNA-processing ESF1-like protein
NULL
Nbe.v1.1.chr02g01720
Nbe.v1.1.chr02g01720.1
Nbe.v1.s00090g01720
Nbe.v1.1.chr02:139545846-139553098
+
Niben101Scf10132g01028.1
DEAD box RNA helicase 1
DEAD box RNA helicase 1
Nbe.v1.1.chr02g08960
Nbe.v1.1.chr02g08960.1
Nbe.v1.s00090g08960
Nbe.v1.1.chr02:123715118-123716197
-
Niben101Scf01436g03011.1
Late embryogenesis abundant protein (LEA) family protein
Late embryogenesis abundant protein (LEA) family protein
Nbe.v1.1.chr02g42870
Nbe.v1.1.chr02g42870.1
Nbe.v1.s00090g42870
Nbe.v1.1.chr02:7651416-7655158
-
Niben101Scf09127g01005.1
potassium transport 2/3
potassium transport 2/3
Nbe.v1.1.chr07g01760
Nbe.v1.1.chr07g01760.1
Nbe.v1.s00100g01760
Nbe.v1.1.chr07:138055367-138059085
-
Niben101Scf06976g03016.1
XH/XS domain-containing protein
XH/XS domain-containing protein
Nbe.v1.1.chr18g32040
Nbe.v1.1.chr18g32040.1
Nbe.v1.s00110g32040
Nbe.v1.1.chr18:34205513-34207554
-
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Nbe.v1.1.chr18g33970
Nbe.v1.1.chr18g33970.1
Nbe.v1.s00110g33970
Nbe.v1.1.chr18:28925213-28925944
+
Niben101Scf05323g02008.1
Zinc finger C-x8-C-x5-C-x3-H type family protein
Zinc finger C-x8-C-x5-C-x3-H type family protein
Nbe.v1.1.chr18g40850
Nbe.v1.1.chr18g40850.1
Nbe.v1.s00110g40850
Nbe.v1.1.chr18:3108523-3110791
-
Niben101Scf05627g00006.1
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr04g14460
Nbe.v1.1.chr04g14460.1
Nbe.v1.s00130g14460
Nbe.v1.1.chr04:67670229-67674611
+
Niben101Scf02307g02001.1
DNA-binding bromodomain-containing protein
DNA-binding bromodomain-containing protein
Nbe.v1.1.chr04g21800
Nbe.v1.1.chr04g21800.1
Nbe.v1.s00130g21800
Nbe.v1.1.chr04:41923080-41924978
+
Niben101Scf02429g05009.1
KRR1 family protein
NULL
Nbe.v1.1.chr04g27070
Nbe.v1.1.chr04g27070.1
Nbe.v1.s00130g27070
Nbe.v1.1.chr04:23314405-23315283
-
Niben101Scf00674g06003.1
F-box/RNI-like superfamily protein
NULL
Nbe.v1.1.chr04g32890
Nbe.v1.1.chr04g32890.1
Nbe.v1.s00130g32890
Nbe.v1.1.chr04:6090964-6092428
-
biotin F
biotin F
Nbe.v1.1.chr14g04970
Nbe.v1.1.chr14g04970.1
Nbe.v1.s00140g04970
Nbe.v1.1.chr14:115227042-115228366
+
Niben101Scf01464g02008.1
myosin heavy chain-like protein
NULL
Nbe.v1.1.chr14g04980
Nbe.v1.1.chr14g04980.1
Nbe.v1.s00140g04980
Nbe.v1.1.chr14:115205958-115206314
-
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Nbe.v1.1.chr14g12970
Nbe.v1.1.chr14g12970.1
Nbe.v1.s00140g12970
Nbe.v1.1.chr14:87585423-87594962
+
Niben101Scf01478g00010.1
RING/U-box superfamily protein
RING/U-box superfamily protein
Nbe.v1.1.chr14g16150
Nbe.v1.1.chr14g16150.1
Nbe.v1.s00140g16150
Nbe.v1.1.chr14:77822364-77827641
-
Niben101Scf01209g02016.1
phosphatidylinositol-4-phosphate 5-kinase 1
phosphatidylinositol-4-phosphate 5-kinase 1
Nbe.v1.1.chr14g18700
Nbe.v1.1.chr14g18700.1
Nbe.v1.s00140g18700
Nbe.v1.1.chr14:71224337-71238244
-
Niben101Scf07650g02007.1
zinc finger C3H1 domain protein
NULL
Nbe.v1.1.chr14g34740
Nbe.v1.1.chr14g34740.1
Nbe.v1.s00140g34740
Nbe.v1.1.chr14:22595543-22600454
+
No description
Nbe.v1.1.chr03g25900
Nbe.v1.1.chr03g25900.1
Nbe.v1.s00150g25900
Nbe.v1.1.chr03:91056283-91058676
-
Niben101Scf00751g06033.1
potassium transport 2/3
potassium transport 2/3
Nbe.v1.1.chr03g26520
Nbe.v1.1.chr03g26520.1
Nbe.v1.s00150g26520
Nbe.v1.1.chr03:93115146-93140417
-
Niben101Scf08455g00002.1
gamma-irradiation and mitomycin c induced 1
NULL
Nbe.v1.1.chr03g32790
Nbe.v1.1.chr03g32790.1
Nbe.v1.s00150g32790
Nbe.v1.1.chr03:107678259-107685769
-
Niben101Scf21589g00002.1
U3 small nucleolar ribonucleoprotein
NULL
Nbe.v1.1.chr01g08840
Nbe.v1.1.chr01g08840.1
Nbe.v1.s00160g08840
Nbe.v1.1.chr01:102569332-102574386
-
Niben101Scf06779g00008.1
cryptochrome 2
cryptochrome 2
Nbe.v1.1.chr01g22610
Nbe.v1.1.chr01g22610.1
Nbe.v1.s00160g22610
Nbe.v1.1.chr01:54829393-54834810
-
Niben101Scf02513g08002.1
Protein phosphatase 2C family protein
Protein phosphatase 2C family protein
Nbe.v1.1.chr01g26710
Nbe.v1.1.chr01g26710.1
Nbe.v1.s00160g26710
Nbe.v1.1.chr01:43967724-43971207
+
Niben101Scf17802g00009.1
Putative endonuclease or glycosyl hydrolase
Putative endonuclease or glycosyl hydrolase
Nbe.v1.1.chr01g35590
Nbe.v1.1.chr01g35590.1
Nbe.v1.s00160g35590
Nbe.v1.1.chr01:23624444-23635332
+
Niben101Scf00578g07005.1
transcription regulatory protein SNF2
NULL
Nbe.v1.1.chr01g44370
Nbe.v1.1.chr01g44370.1
Nbe.v1.s00160g44370
Nbe.v1.1.chr01:3499435-3499983
+
Niben101Scf04664g04021.1
prostatic spermine-binding-like protein
NULL
Nbe.v1.1.chr01g46160
Nbe.v1.1.chr01g46160.1
Nbe.v1.s00160g46160
Nbe.v1.1.chr01:156225-165708
+
Niben101Scf04194g00021.1
DNA polymerase V family
DNA polymerase V family
Nbe.v1.1.chr11g03840
Nbe.v1.1.chr11g03840.1
Nbe.v1.s00170g03840
Nbe.v1.1.chr11:121444094-121449074
-
Niben101Scf06017g01010.1
cryptochrome 2
cryptochrome 2
Nbe.v1.1.chr11g09720
Nbe.v1.1.chr11g09720.1
Nbe.v1.s00170g09720
Nbe.v1.1.chr11:104000382-104002067
-
Niben101Scf01977g02010.1
Ubiquitin carboxyl-terminal hydrolase family protein
Ubiquitin carboxyl-terminal hydrolase family protein
Nbe.v1.1.chr11g16140
Nbe.v1.1.chr11g16140.1
Nbe.v1.s00170g16140
Nbe.v1.1.chr11:87904328-87904876
+
Niben101Scf01190g01009.1
prostatic spermine-binding-like protein
NULL
Nbe.v1.1.chr11g23070
Nbe.v1.1.chr11g23070.1
Nbe.v1.s00170g23070
Nbe.v1.1.chr11:69201230-69203005
+
Niben101Scf02406g04026.1
Leucine-rich repeat (LRR) family protein
Leucine-rich repeat (LRR) family protein
Nbe.v1.1.chr11g29360
Nbe.v1.1.chr11g29360.1
Nbe.v1.s00170g29360
Nbe.v1.1.chr11:44806226-44829727
+
Niben101Scf06955g01002.1
Transcription factor jumonji (jmjC) domain-containing protein
Transcription factor jumonji (jmjC) domain-containing protein
Nbe.v1.1.chr11g33900
Nbe.v1.1.chr11g33900.1
Nbe.v1.s00170g33900
Nbe.v1.1.chr11:29464277-29466394
+
Niben101Scf00573g04004.1
zinc finger (CCCH-type) family protein
zinc finger (CCCH-type) family protein
Nbe.v1.1.chr16g20490
Nbe.v1.1.chr16g20490.1
Nbe.v1.s00180g20490
Nbe.v1.1.chr16:146512402-146513034
+
Niben101Scf06156g04011.1
AGAMOUS-like 62
AGAMOUS-like 62
Nbe.v1.1.chr15g14350
Nbe.v1.1.chr15g14350.1
Nbe.v1.s00190g14350
Nbe.v1.1.chr15:130914480-130918702
-
Niben101Scf02335g02003.1
plant/protein
NULL