N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 74

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g07410
Nbe.v1.1.chr17g07410.1
Nbe.v1.s00010g07410
Nbe.v1.1.chr17:165423344-165426234
+
Niben101Scf00712g03003.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Nbe.v1.1.chr17g21210
Nbe.v1.1.chr17g21210.1
Nbe.v1.s00010g21210
Nbe.v1.1.chr17:114689211-114695414
+
Niben101Scf08729g02019.1
transmembrane protein
NULL
Nbe.v1.1.chr17g37510
Nbe.v1.1.chr17g37510.1
Nbe.v1.s00010g37510
Nbe.v1.1.chr17:51809555-51809950
+
nuclear RNA polymerase A1
nuclear RNA polymerase A1
Nbe.v1.1.chr17g41490
Nbe.v1.1.chr17g41490.1
Nbe.v1.s00010g41490
Nbe.v1.1.chr17:38796002-38814463
+
Niben101Scf01235g00019.1
phosphofructokinase 3
phosphofructokinase 3
Nbe.v1.1.chr17g46240
Nbe.v1.1.chr17g46240.1
Nbe.v1.s00010g46240
Nbe.v1.1.chr17:21139602-21141010
-
SART-1 family
NULL
Nbe.v1.1.chr17g46290
Nbe.v1.1.chr17g46290.1
Nbe.v1.s00010g46290
Nbe.v1.1.chr17:20947284-20963365
-
Niben101Scf09472g02009.1
dynamin-like 3
dynamin-like 3
Nbe.v1.1.chr06g08200
Nbe.v1.1.chr06g08200.1
Nbe.v1.s00020g08200
Nbe.v1.1.chr06:126050732-126053739
+
Niben101Scf08447g01022.1
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr06g11720
Nbe.v1.1.chr06g11720.1
Nbe.v1.s00020g11720
Nbe.v1.1.chr06:113113069-113113476
+
Transcription elongation factor (TFIIS) family protein
Transcription elongation factor (TFIIS) family protein
Nbe.v1.1.chr06g26920
Nbe.v1.1.chr06g26920.1
Nbe.v1.s00020g26920
Nbe.v1.1.chr06:56747419-56750268
+
Niben101Scf03135g00003.1
Disease resistance protein (CC-NBS-LRR class) family
NULL
Nbe.v1.1.chr06g40150
Nbe.v1.1.chr06g40150.1
Nbe.v1.s00020g40150
Nbe.v1.1.chr06:6928804-6934786
+
RNA binding / RNA-directed DNA polymerase
RNA binding;RNA-directed DNA polymerases
Nbe.v1.1.chr05g12500
Nbe.v1.1.chr05g12500.1
Nbe.v1.s00030g12500
Nbe.v1.1.chr05:42344027-42348617
+
Niben101Scf08758g02003.1
breast cancer susceptibility1
breast cancer susceptibility1
Nbe.v1.1.chr05g22700
Nbe.v1.1.chr05g22700.1
Nbe.v1.s00030g22700
Nbe.v1.1.chr05:78179359-78185163
+
Niben101Scf13411g04012.1
putative mitochondrial RNA helicase 2
putative mitochondrial RNA helicase 2
Nbe.v1.1.chr05g23640
Nbe.v1.1.chr05g23640.1
Nbe.v1.s00030g23640
Nbe.v1.1.chr05:81761054-81762764
-
Niben101Scf16329g00024.1
Cytochrome b561/ferric reductase transmembrane protein family
Cytochrome b561/ferric reductase transmembrane protein family
Nbe.v1.1.chr05g25740
Nbe.v1.1.chr05g25740.1
Nbe.v1.s00030g25740
Nbe.v1.1.chr05:89608497-89632587
+
Niben101Scf10630g01003.1
sec34-like family protein
sec34-like family protein
Nbe.v1.1.chr09g13450
Nbe.v1.1.chr09g13450.1
Nbe.v1.s00040g13450
Nbe.v1.1.chr09:102497051-102497664
-
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1)
DOMAIN OF UNKNOWN FUNCTION 724 1
Nbe.v1.1.chr09g14900
Nbe.v1.1.chr09g14900.1
Nbe.v1.s00040g14900
Nbe.v1.1.chr09:97811268-97816086
-
Niben101Scf00482g10003.1
carbamoyl phosphate synthetase B
carbamoyl phosphate synthetase B
Nbe.v1.1.chr09g17170
Nbe.v1.1.chr09g17170.1
Nbe.v1.s00040g17170
Nbe.v1.1.chr09:89099307-89103798
+
Niben101Scf11723g01002.1
oxidoreductase%2C 2OG-Fe(II) oxygenase family protein
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nbe.v1.1.chr09g26580
Nbe.v1.1.chr09g26580.1
Nbe.v1.s00040g26580
Nbe.v1.1.chr09:59948557-59955500
+
Niben101Scf07638g04010.1
varicose-like protein
varicose-related
Nbe.v1.1.chr10g22680
Nbe.v1.1.chr10g22680.1
Nbe.v1.s00050g22680
Nbe.v1.1.chr10:76472199-76486654
-
Niben101Scf01334g06010.1
squamosa promoter-binding protein-like 12
squamosa promoter-binding protein-like 12
Nbe.v1.1.chr10g28270
Nbe.v1.1.chr10g28270.1
Nbe.v1.s00050g28270
Nbe.v1.1.chr10:94788147-94791193
+
Niben101Scf01998g06011.1
nucleosome assembly protein 1%3B2
nucleosome assembly protein 1;2
Nbe.v1.1.chr10g29310
Nbe.v1.1.chr10g29310.1
Nbe.v1.s00050g29310
Nbe.v1.1.chr10:97972915-97981434
-
Niben101Scf01235g00019.1
phosphofructokinase 3
phosphofructokinase 3
Nbe.v1.1.chr10g35880
Nbe.v1.1.chr10g35880.1
Nbe.v1.s00050g35880
Nbe.v1.1.chr10:124805534-124806299
+
Niben101Scf05118g06012.1
mesoderm induction early response protein
NULL
Nbe.v1.1.chr19g07060
Nbe.v1.1.chr19g07060.1
Nbe.v1.s00060g07060
Nbe.v1.1.chr19:117087785-117095408
-
No description
Nbe.v1.1.chr19g08740
Nbe.v1.1.chr19g08740.1
Nbe.v1.s00060g08740
Nbe.v1.1.chr19:110438832-110443411
-
Niben101Scf00056g09002.1
breast cancer susceptibility1
breast cancer susceptibility1
Nbe.v1.1.chr19g28210
Nbe.v1.1.chr19g28210.1
Nbe.v1.s00060g28210
Nbe.v1.1.chr19:43878964-43882583
-
Niben101Scf04133g01003.1
EXS (ERD1/XPR1/SYG1) family protein
EXS (ERD1/XPR1/SYG1) family protein
Nbe.v1.1.chr19g43750
Nbe.v1.1.chr19g43750.1
Nbe.v1.s00060g43750
Nbe.v1.1.chr19:5485902-5486840
+
MuDR family transposase
NULL
Nbe.v1.1.chr19g45130
Nbe.v1.1.chr19g45130.1
Nbe.v1.s00060g45130
Nbe.v1.1.chr19:1920988-1925428
-
Niben101Scf06267g03010.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Nbe.v1.1.chr12g20590
Nbe.v1.1.chr12g20590.1
Nbe.v1.s00070g20590
Nbe.v1.1.chr12:70567046-70573309
-
Niben101Scf07459g00016.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Calcium-dependent lipid-binding (CaLB domain) family protein
Nbe.v1.1.chr12g21150
Nbe.v1.1.chr12g21150.1
Nbe.v1.s00070g21150
Nbe.v1.1.chr12:69586594-69589656
+
Niben101Scf02565g03002.1
UDP-Glycosyltransferase superfamily protein
UDP-Glycosyltransferase superfamily protein
Nbe.v1.1.chr12g28920
Nbe.v1.1.chr12g28920.1
Nbe.v1.s00070g28920
Nbe.v1.1.chr12:46416512-46416958
-
Niben101Scf13180g00001.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NULL
Nbe.v1.1.chr12g35870
Nbe.v1.1.chr12g35870.1
Nbe.v1.s00070g35870
Nbe.v1.1.chr12:26163000-26167363
-
Niben101Scf02864g11040.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NULL
Nbe.v1.1.chr08g30800
Nbe.v1.1.chr08g30800.1
Nbe.v1.s00080g30800
Nbe.v1.1.chr08:111250647-111253055
-
Niben101Scf20135g00004.1
Leucine-rich repeat (LRR) family protein
NULL
Nbe.v1.1.chr08g37910
Nbe.v1.1.chr08g37910.1
Nbe.v1.s00080g37910
Nbe.v1.1.chr08:137227388-137229039
+
Cysteine/Histidine-rich C1 domain family protein
Cysteine/Histidine-rich C1 domain family protein
Nbe.v1.1.chr02g13800
Nbe.v1.1.chr02g13800.1
Nbe.v1.s00090g13800
Nbe.v1.1.chr02:113602050-113603705
-
Niben101Scf05245g04007.1
Pentatricopeptide repeat (PPR) superfamily protein
Pentatricopeptide repeat (PPR) superfamily protein
Nbe.v1.1.chr02g19180
Nbe.v1.1.chr02g19180.1
Nbe.v1.s00090g19180
Nbe.v1.1.chr02:100300953-100305386
-
Niben101Scf03735g02006.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Nbe.v1.1.chr02g24800
Nbe.v1.1.chr02g24800.1
Nbe.v1.s00090g24800
Nbe.v1.1.chr02:83287775-83292307
-
Niben101Scf02156g04001.1
Zinc finger (C3HC4-type RING finger) family protein
Zinc finger (C3HC4-type RING finger) family protein
Nbe.v1.1.chr02g26990
Nbe.v1.1.chr02g26990.1
Nbe.v1.s00090g26990
Nbe.v1.1.chr02:75493890-75497760
-
Niben101Scf14479g01005.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NULL
Nbe.v1.1.chr02g44120
Nbe.v1.1.chr02g44120.1
Nbe.v1.s00090g44120
Nbe.v1.1.chr02:2474455-2476368
-
Niben101Scf01494g01009.1
Pre-mRNA splicing Prp18-interacting factor
Pre-mRNA splicing Prp18-interacting factor
Nbe.v1.1.chr07g24820
Nbe.v1.1.chr07g24820.1
Nbe.v1.s00100g24820
Nbe.v1.1.chr07:46127713-46128802
+
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr18g06370
Nbe.v1.1.chr18g06370.1
Nbe.v1.s00110g06370
Nbe.v1.1.chr18:122042180-122048794
+
Niben101Scf02852g03019.1
No description
Nbe.v1.1.chr18g09080
Nbe.v1.1.chr18g09080.1
Nbe.v1.s00110g09080
Nbe.v1.1.chr18:112050119-112056290
-
Niben101Scf12502g00010.1
formin homolog 6
formin homolog 6
Nbe.v1.1.chr18g11820
Nbe.v1.1.chr18g11820.1
Nbe.v1.s00110g11820
Nbe.v1.1.chr18:102648837-102669194
-
Niben101Scf07242g04005.1
WD-40 repeat family protein
WD-40 repeat family protein
Nbe.v1.1.chr18g21330
Nbe.v1.1.chr18g21330.1
Nbe.v1.s00110g21330
Nbe.v1.1.chr18:68871079-68882466
-
Niben101Scf05543g01004.1
proline-rich family protein
proline-rich family protein
Nbe.v1.1.chr18g24880
Nbe.v1.1.chr18g24880.1
Nbe.v1.s00110g24880
Nbe.v1.1.chr18:56991142-56999092
-
No description
Nbe.v1.1.chr18g36910
Nbe.v1.1.chr18g36910.1
Nbe.v1.s00110g36910
Nbe.v1.1.chr18:17462853-17464954
-
Niben101Scf02155g01016.1
MuDR family transposase
NULL
Nbe.v1.1.chr18g37380
Nbe.v1.1.chr18g37380.1
Nbe.v1.s00110g37380
Nbe.v1.1.chr18:15610006-15617059
-
Niben101Scf00173g04001.1
Single-stranded nucleic acid binding R3H protein
Single-stranded nucleic acid binding R3H protein
Nbe.v1.1.chr13g30140
Nbe.v1.1.chr13g30140.1
Nbe.v1.s00120g30140
Nbe.v1.1.chr13:88649684-88652550
+
Niben101Scf09365g00025.1
Ubiquitin carboxyl-terminal hydrolase-related protein
NULL
Nbe.v1.1.chr13g35960
Nbe.v1.1.chr13g35960.1
Nbe.v1.s00120g35960
Nbe.v1.1.chr13:101901201-101902502
-
Niben101Scf01027g01015.1
Heavy metal transport/detoxification superfamily protein
Heavy metal transport/detoxification superfamily protein
Nbe.v1.1.chr04g04820
Nbe.v1.1.chr04g04820.1
Nbe.v1.s00130g04820
Nbe.v1.1.chr04:110528220-110536368
-
Niben101Scf04690g02038.1
formin homolog 6
formin homolog 6
Nbe.v1.1.chr04g06950
Nbe.v1.1.chr04g06950.1
Nbe.v1.s00130g06950
Nbe.v1.1.chr04:100864795-100879621
-
Niben101Scf13250g02004.1
ADA2 2B
homolog of yeast ADA2 2B
Nbe.v1.1.chr04g27750
Nbe.v1.1.chr04g27750.1
Nbe.v1.s00130g27750
Nbe.v1.1.chr04:20570758-20573099
-
Niben101Scf03971g02003.1
suppressor SRP40-like protein
NULL
Nbe.v1.1.chr04g29930
Nbe.v1.1.chr04g29930.1
Nbe.v1.s00130g29930
Nbe.v1.1.chr04:13426744-13434040
-
Niben101Scf09260g00005.1
hydroxyproline-rich glycoprotein family protein
hydroxyproline-rich glycoprotein family protein
Nbe.v1.1.chr04g33760
Nbe.v1.1.chr04g33760.1
Nbe.v1.s00130g33760
Nbe.v1.1.chr04:3855436-3863147
+
Niben101Scf11709g00004.1
Transducin/WD40 repeat-like superfamily protein
Transducin/WD40 repeat-like superfamily protein
Nbe.v1.1.chr14g02200
Nbe.v1.1.chr14g02200.1
Nbe.v1.s00140g02200
Nbe.v1.1.chr14:125224052-125224489
+
Niben101Scf09962g01008.1
BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER
NULL
Nbe.v1.1.chr14g14550
Nbe.v1.1.chr14g14550.1
Nbe.v1.s00140g14550
Nbe.v1.1.chr14:82109169-82112405
-
No description
Nbe.v1.1.chr14g21610
Nbe.v1.1.chr14g21610.1
Nbe.v1.s00140g21610
Nbe.v1.1.chr14:63822454-63829775
+
Niben101Scf15710g00006.1
hydroxyproline-rich glycoprotein family protein
hydroxyproline-rich glycoprotein family protein
Nbe.v1.1.chr14g35340
Nbe.v1.1.chr14g35340.1
Nbe.v1.s00140g35340
Nbe.v1.1.chr14:20626728-20628536
-
Niben101Scf07638g04010.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr03g23480
Nbe.v1.1.chr03g23480.1
Nbe.v1.s00150g23480
Nbe.v1.1.chr03:84664689-84665114
-
SPT2 chromatin protein
SPT2 chromatin protein
Nbe.v1.1.chr01g06400
Nbe.v1.1.chr01g06400.1
Nbe.v1.s00160g06400
Nbe.v1.1.chr01:110402821-110430136
+
Niben101Scf11646g02010.1
myosin XI A
myosin XI A
Nbe.v1.1.chr01g10160
Nbe.v1.1.chr01g10160.1
Nbe.v1.s00160g10160
Nbe.v1.1.chr01:97465776-97472195
+
Niben101Scf01391g03009.1
oxidoreductase%2C 2OG-Fe(II) oxygenase family protein
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nbe.v1.1.chr01g18880
Nbe.v1.1.chr01g18880.1
Nbe.v1.s00160g18880
Nbe.v1.1.chr01:65943774-65954264
+
No description
Nbe.v1.1.chr01g19510
Nbe.v1.1.chr01g19510.1
Nbe.v1.s00160g19510
Nbe.v1.1.chr01:64222424-64226202
-
MIF4G domain-containing protein / MA3 domain-containing protein
MIF4G domain-containing protein / MA3 domain-containing protein
Nbe.v1.1.chr01g23880
Nbe.v1.1.chr01g23880.1
Nbe.v1.s00160g23880
Nbe.v1.1.chr01:51428910-51432889
+
Niben101Scf02122g00010.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NULL
Nbe.v1.1.chr11g02880
Nbe.v1.1.chr11g02880.1
Nbe.v1.s00170g02880
Nbe.v1.1.chr11:123803259-123809550
+
Niben101Scf02699g01016.1
oxidoreductase%2C 2OG-Fe(II) oxygenase family protein
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nbe.v1.1.chr11g19970
Nbe.v1.1.chr11g19970.1
Nbe.v1.s00170g19970
Nbe.v1.1.chr11:77783384-77787334
-
Niben101Scf03468g02013.1
oxidoreductase%2C 2OG-Fe(II) oxygenase family protein
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nbe.v1.1.chr16g06570
Nbe.v1.1.chr16g06570.1
Nbe.v1.s00180g06570
Nbe.v1.1.chr16:91338199-91339464
-
Niben101Scf00339g09007.1
Glutaredoxin family protein
Glutaredoxin family protein
Nbe.v1.1.chr16g12590
Nbe.v1.1.chr16g12590.1
Nbe.v1.s00180g12590
Nbe.v1.1.chr16:114997731-115013475
+
Niben101Scf04473g07001.1
nuclear encoded CLP protease 5
nuclear encoded CLP protease 5
Nbe.v1.1.chr16g26610
Nbe.v1.1.chr16g26610.1
Nbe.v1.s00180g26610
Nbe.v1.1.chr16:165224513-165226126
-
Niben101Scf03634g09019.1
No description
Nbe.v1.1.chr15g00700
Nbe.v1.1.chr15g00700.1
Nbe.v1.s00190g00700
Nbe.v1.1.chr15:175157152-175159008
+
Niben101Scf09962g01008.1
BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER
NULL
Nbe.v1.1.chr15g15100
Nbe.v1.1.chr15g15100.1
Nbe.v1.s00190g15100
Nbe.v1.1.chr15:128778511-128779945
-
Niben101Scf00654g04012.1
RNA polymerase II elongation factor
NULL
Nbe.v1.1.chr15g16160
Nbe.v1.1.chr15g16160.1
Nbe.v1.s00190g16160
Nbe.v1.1.chr15:125738306-125740716
+
Niben101Scf29235g00002.1
C2H2-type zinc finger family protein
C2H2-type zinc finger family protein
Nbe.v1.1.chr16g42510
Nbe.v1.1.chr16g42510.1
Nbe.v1.s00200g11100
Nbe.v1.1.chr16:29480039-29484492
-
Niben101Scf00247g00013.1
oxidoreductase%2C 2OG-Fe(II) oxygenase family protein
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nbe.v1.1.chr16g49320
Nbe.v1.1.chr16g49320.1
Nbe.v1.s00200g17910
Nbe.v1.1.chr16:54657407-54661712
+
Niben101Scf08817g01015.1
mesoderm induction early response protein
NULL
Nbe.v1.1.chr16g50320
Nbe.v1.1.chr16g50320.1
Nbe.v1.s00200g18910
Nbe.v1.1.chr16:59247671-59248120
+
Niben101Scf03871g04014.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Plant invertase/pectin methylesterase inhibitor superfamily protein