N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 51

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g07250
Nbe.v1.1.chr17g07250.1
Nbe.v1.s00010g07250
Nbe.v1.1.chr17:165859689-165862312
-
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Nbe.v1.1.chr17g37540
Nbe.v1.1.chr17g37540.1
Nbe.v1.s00010g37540
Nbe.v1.1.chr17:51658908-51672313
-
Niben101Scf02062g04009.1
GW repeat- and PHD finger-containing protein NERD
NULL
Nbe.v1.1.chr17g42390
Nbe.v1.1.chr17g42390.1
Nbe.v1.s00010g42390
Nbe.v1.1.chr17:35605498-35628019
-
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr17g45440
Nbe.v1.1.chr17g45440.1
Nbe.v1.s00010g45440
Nbe.v1.1.chr17:24152676-24155466
-
Niben101Scf13617g00001.1
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
Nbe.v1.1.chr06g03970
Nbe.v1.1.chr06g03970.1
Nbe.v1.s00020g03970
Nbe.v1.1.chr06:139926126-139926830
-
GDSL-like Lipase/Acylhydrolase superfamily protein
NULL
Nbe.v1.1.chr06g07540
Nbe.v1.1.chr06g07540.1
Nbe.v1.s00020g07540
Nbe.v1.1.chr06:128807543-128812144
-
Niben101Scf03479g05039.1
cell division cycle 45
cell division cycle 45
Nbe.v1.1.chr06g20800
Nbe.v1.1.chr06g20800.1
Nbe.v1.s00020g20800
Nbe.v1.1.chr06:79747396-79751517
-
Niben101Scf00246g04005.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr06g26580
Nbe.v1.1.chr06g26580.1
Nbe.v1.s00020g26580
Nbe.v1.1.chr06:57836211-57837769
-
Niben101Scf03061g00007.1
O-acetyltransferase family protein
O-acetyltransferase family protein
Nbe.v1.1.chr05g35860
Nbe.v1.1.chr05g35860.1
Nbe.v1.s00030g35860
Nbe.v1.1.chr05:130368204-130368929
+
Niben101Scf03108g07001.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr05g35870
Nbe.v1.1.chr05g35870.1
Nbe.v1.s00030g35870
Nbe.v1.1.chr05:130368960-130371765
+
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr09g10980
Nbe.v1.1.chr09g10980.1
Nbe.v1.s00040g10980
Nbe.v1.1.chr09:111581459-111585290
+
Niben101Scf00246g04005.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr09g31810
Nbe.v1.1.chr09g31810.1
Nbe.v1.s00040g31810
Nbe.v1.1.chr09:41215450-41227618
-
Niben101Scf03886g02010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr10g29970
Nbe.v1.1.chr10g29970.1
Nbe.v1.s00050g29970
Nbe.v1.1.chr10:100822133-100831448
+
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr10g33860
Nbe.v1.1.chr10g33860.1
Nbe.v1.s00050g33860
Nbe.v1.1.chr10:115535012-115555084
-
Niben101Scf04350g00020.1
Formin Homology 14
NULL
Nbe.v1.1.chr10g39240
Nbe.v1.1.chr10g39240.1
Nbe.v1.s00050g39240
Nbe.v1.1.chr10:133518151-133518360
-
Niben101Scf05391g02010.1
cysteine/histidine-rich C1 domain protein
NULL
Nbe.v1.1.chr19g14130
Nbe.v1.1.chr19g14130.1
Nbe.v1.s00060g14130
Nbe.v1.1.chr19:90786298-90794838
+
Niben101Scf01368g00003.1
U3 ribonucleoprotein (Utp) family protein
U3 ribonucleoprotein (Utp) family protein
Nbe.v1.1.chr19g25360
Nbe.v1.1.chr19g25360.1
Nbe.v1.s00060g25360
Nbe.v1.1.chr19:50801144-50802217
+
No description
Nbe.v1.1.chr12g10250
Nbe.v1.1.chr12g10250.1
Nbe.v1.s00070g10250
Nbe.v1.1.chr12:106399910-106406144
-
Niben101Scf06855g01012.1
sporulation RMD1-like protein%2C putative (DUF155)
Protein of unknown function (DUF155)
Nbe.v1.1.chr12g21670
Nbe.v1.1.chr12g21670.1
Nbe.v1.s00070g21670
Nbe.v1.1.chr12:68418475-68420049
-
Niben101Scf00603g08012.1
histidine acid phosphatase family protein
histidine acid phosphatase family protein
Nbe.v1.1.chr12g33040
Nbe.v1.1.chr12g33040.1
Nbe.v1.s00070g33040
Nbe.v1.1.chr12:34861059-34863026
+
Niben101Scf02215g05019.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr12g36520
Nbe.v1.1.chr12g36520.1
Nbe.v1.s00070g36520
Nbe.v1.1.chr12:24196284-24207125
+
Niben101Scf07027g00009.1
auxin response factor 8
auxin response factor 8
Nbe.v1.1.chr08g07700
Nbe.v1.1.chr08g07700.1
Nbe.v1.s00080g07700
Nbe.v1.1.chr08:26985146-27024789
+
Niben101Scf04184g02008.1
RNAligase
RNAligase
Nbe.v1.1.chr08g11700
Nbe.v1.1.chr08g11700.1
Nbe.v1.s00080g11700
Nbe.v1.1.chr08:40855390-40862042
+
Niben101Scf02350g02013.1
transferases%2C transferring hexosyl groups
transferases, transferring hexosyl groups
Nbe.v1.1.chr08g27990
Nbe.v1.1.chr08g27990.1
Nbe.v1.s00080g27990
Nbe.v1.1.chr08:100534485-100544547
-
Niben101Scf14210g00010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr08g29560
Nbe.v1.1.chr08g29560.1
Nbe.v1.s00080g29560
Nbe.v1.1.chr08:107363551-107365701
+
Niben101Scf04953g09010.1
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr02g16880
Nbe.v1.1.chr02g16880.1
Nbe.v1.s00090g16880
Nbe.v1.1.chr02:106633378-106634724
+
Niben101Scf01991g00012.1
Pentatricopeptide repeat (PPR-like) superfamily protein
Pentatricopeptide repeat (PPR-like) superfamily protein
Nbe.v1.1.chr02g23070
Nbe.v1.1.chr02g23070.1
Nbe.v1.s00090g23070
Nbe.v1.1.chr02:89425091-89427058
+
Niben101Scf02215g05019.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr07g09920
Nbe.v1.1.chr07g09920.1
Nbe.v1.s00100g09920
Nbe.v1.1.chr07:101926238-101937141
-
Niben101Scf10390g00003.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr07g28740
Nbe.v1.1.chr07g28740.1
Nbe.v1.s00100g28740
Nbe.v1.1.chr07:31003387-31006028
-
Niben101Scf04995g07008.1
binding protein
binding
Nbe.v1.1.chr18g22430
Nbe.v1.1.chr18g22430.1
Nbe.v1.s00110g22430
Nbe.v1.1.chr18:65477563-65499991
+
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr18g34770
Nbe.v1.1.chr18g34770.1
Nbe.v1.s00110g34770
Nbe.v1.1.chr18:25553710-25567259
-
Niben101Scf03061g00007.1
O-acetyltransferase family protein
O-acetyltransferase family protein
Nbe.v1.1.chr13g25290
Nbe.v1.1.chr13g25290.1
Nbe.v1.s00120g25290
Nbe.v1.1.chr13:76805008-76816584
+
Niben101Scf01617g00005.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr13g45980
Nbe.v1.1.chr13g45980.1
Nbe.v1.s00120g45980
Nbe.v1.1.chr13:131718793-131724199
-
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr13g46000
Nbe.v1.1.chr13g46000.1
Nbe.v1.s00120g46000
Nbe.v1.1.chr13:131971640-131977373
+
Niben101Scf02399g01011.1
Deoxyxylulose-5-phosphate synthase
Deoxyxylulose-5-phosphate synthase
Nbe.v1.1.chr14g00090
Nbe.v1.1.chr14g00090.1
Nbe.v1.s00140g00090
Nbe.v1.1.chr14:133287533-133287838
-
Niben101Scf03150g03001.1
U-box domain-containing protein kinase family protein
U-box domain-containing protein kinase family protein
Nbe.v1.1.chr14g33880
Nbe.v1.1.chr14g33880.1
Nbe.v1.s00140g33880
Nbe.v1.1.chr14:25256412-25256771
+
MATE efflux family protein
MATE efflux family protein
Nbe.v1.1.chr03g13260
Nbe.v1.1.chr03g13260.1
Nbe.v1.s00150g13260
Nbe.v1.1.chr03:47158248-47162856
-
Niben101Scf03494g12002.1
D111/G-patch domain-containing protein
D111/G-patch domain-containing protein
Nbe.v1.1.chr03g28920
Nbe.v1.1.chr03g28920.1
Nbe.v1.s00150g28920
Nbe.v1.1.chr03:99282154-99286945
+
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr03g31270
Nbe.v1.1.chr03g31270.1
Nbe.v1.s00150g31270
Nbe.v1.1.chr03:104631838-104638949
+
Niben101Scf09025g02026.1
NAD(P)-binding Rossmann-fold superfamily protein
NAD(P)-binding Rossmann-fold superfamily protein
Nbe.v1.1.chr01g06070
Nbe.v1.1.chr01g06070.1
Nbe.v1.s00160g06070
Nbe.v1.1.chr01:111783743-111787914
+
Niben101Scf03467g00009.1
Leucine-rich repeat protein kinase family protein
Leucine-rich repeat protein kinase family protein
Nbe.v1.1.chr01g08190
Nbe.v1.1.chr01g08190.1
Nbe.v1.s00160g08190
Nbe.v1.1.chr01:104987464-104989074
+
Niben101Scf00367g08003.1
No description
Nbe.v1.1.chr01g27870
Nbe.v1.1.chr01g27870.1
Nbe.v1.s00160g27870
Nbe.v1.1.chr01:41019358-41020514
-
Niben101Scf01368g00003.1
U3 ribonucleoprotein (Utp) family protein
U3 ribonucleoprotein (Utp) family protein
Nbe.v1.1.chr01g31550
Nbe.v1.1.chr01g31550.1
Nbe.v1.s00160g31550
Nbe.v1.1.chr01:33381324-33384401
+
Niben101Scf11383g02020.1
with no lysine (K) kinase 1
with no lysine (K) kinase 1
Nbe.v1.1.chr01g37010
Nbe.v1.1.chr01g37010.1
Nbe.v1.s00160g37010
Nbe.v1.1.chr01:20294866-20299010
+
Receptor-like protein kinase-related family protein
Receptor-like protein kinase-related family protein
Nbe.v1.1.chr11g26260
Nbe.v1.1.chr11g26260.1
Nbe.v1.s00170g26260
Nbe.v1.1.chr11:55183537-55189513
-
Niben101Scf11774g00003.1
chloroplastic lipocalin
chloroplastic lipocalin
Nbe.v1.1.chr11g30950
Nbe.v1.1.chr11g30950.1
Nbe.v1.s00170g30950
Nbe.v1.1.chr11:38600340-38607459
-
Niben101Scf17044g01018.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr11g33380
Nbe.v1.1.chr11g33380.1
Nbe.v1.s00170g33380
Nbe.v1.1.chr11:30864884-30875555
-
Niben101Scf05166g01022.1
ABC2 homolog 6
ABC2 homolog 6
Nbe.v1.1.chr16g12640
Nbe.v1.1.chr16g12640.1
Nbe.v1.s00180g12640
Nbe.v1.1.chr16:115376975-115383369
+
Niben101Scf04473g04001.1
histidine acid phosphatase family protein
histidine acid phosphatase family protein
Nbe.v1.1.chr16g18700
Nbe.v1.1.chr16g18700.1
Nbe.v1.s00180g18700
Nbe.v1.1.chr16:139066276-139072556
+
Niben101Scf14210g00010.1
Transketolase family protein
Transketolase family protein
Nbe.v1.1.chr16g21000
Nbe.v1.1.chr16g21000.1
Nbe.v1.s00180g21000
Nbe.v1.1.chr16:148855564-148857714
+
Niben101Scf06392g01004.1
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr16g23110
Nbe.v1.1.chr16g23110.1
Nbe.v1.s00180g23110
Nbe.v1.1.chr16:155450014-155451838
+
Niben101Scf06350g00013.1
hypothetical protein
NULL