N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 24

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr05g08320
Nbe.v1.1.chr05g08320.1
Nbe.v1.s00030g08320
Nbe.v1.1.chr05:28835367-28835642
-
ARM repeat superfamily protein
ARM repeat superfamily protein
Nbe.v1.1.chr09g37230
Nbe.v1.1.chr09g37230.1
Nbe.v1.s00040g37230
Nbe.v1.1.chr09:22426672-22428562
+
Niben101Ctg15122g00004.1
Serine/Threonine-kinase pakA-like protein
NULL
Nbe.v1.1.chr10g31590
Nbe.v1.1.chr10g31590.1
Nbe.v1.s00050g31590
Nbe.v1.1.chr10:107059114-107060541
+
31-kDa RNA binding protein
NULL
Nbe.v1.1.chr10g36230
Nbe.v1.1.chr10g36230.1
Nbe.v1.s00050g36230
Nbe.v1.1.chr10:125879785-125889924
-
Niben101Scf08812g02011.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Nbe.v1.1.chr19g44570
Nbe.v1.1.chr19g44570.1
Nbe.v1.s00060g44570
Nbe.v1.1.chr19:3448776-3451757
+
Niben101Scf02862g00007.1
Leucine-rich receptor-like protein kinase family protein
Leucine-rich receptor-like protein kinase family protein
Nbe.v1.1.chr12g06430
Nbe.v1.1.chr12g06430.1
Nbe.v1.s00070g06430
Nbe.v1.1.chr12:119531492-119548249
+
Niben101Scf05529g00001.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr12g43350
Nbe.v1.1.chr12g43350.1
Nbe.v1.s00070g43350
Nbe.v1.1.chr12:3525341-3525670
-
Niben101Scf03934g01006.1
translocase of outer membrane 22-V
translocase of outer membrane 22-V
Nbe.v1.1.chr02g06540
Nbe.v1.1.chr02g06540.1
Nbe.v1.s00090g06540
Nbe.v1.1.chr02:128980516-128982799
-
Niben101Scf00176g10001.1
methylesterase PCR A
methylesterase PCR A
Nbe.v1.1.chr02g19010
Nbe.v1.1.chr02g19010.1
Nbe.v1.s00090g19010
Nbe.v1.1.chr02:100837451-100840834
-
Niben101Scf03735g07013.1
Leucine-rich receptor-like protein kinase family protein
Leucine-rich receptor-like protein kinase family protein
Nbe.v1.1.chr07g31600
Nbe.v1.1.chr07g31600.1
Nbe.v1.s00100g31600
Nbe.v1.1.chr07:20083077-20095931
+
Niben101Scf11291g00012.1
signal recognition particle-related / SRP-like protein
signal recognition particle-related / SRP-related
Nbe.v1.1.chr07g34960
Nbe.v1.1.chr07g34960.1
Nbe.v1.s00100g34960
Nbe.v1.1.chr07:9577735-9581757
+
Niben101Scf05458g00003.1
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Nbe.v1.1.chr18g39070
Nbe.v1.1.chr18g39070.1
Nbe.v1.s00110g39070
Nbe.v1.1.chr18:8887939-8890175
+
Niben101Scf04205g03005.1
hypothetical protein (DUF1985)
Domain of unknown function (DUF1985)
Nbe.v1.1.chr13g02320
Nbe.v1.1.chr13g02320.1
Nbe.v1.s00120g02320
Nbe.v1.1.chr13:6850744-6864093
+
Niben101Scf11874g01016.1
FIP1[V]-like protein
NULL
Nbe.v1.1.chr13g06450
Nbe.v1.1.chr13g06450.1
Nbe.v1.s00120g06450
Nbe.v1.1.chr13:22330863-22344672
+
Niben101Scf02706g04005.1
signal recognition particle-related / SRP-like protein
signal recognition particle-related / SRP-related
Nbe.v1.1.chr14g08040
Nbe.v1.1.chr14g08040.1
Nbe.v1.s00140g08040
Nbe.v1.1.chr14:105228789-105237675
-
Niben101Scf03028g01016.1
CELLULOSE SYNTHASE INTERACTIVE 3
NULL
Nbe.v1.1.chr03g04450
Nbe.v1.1.chr03g04450.1
Nbe.v1.s00150g04450
Nbe.v1.1.chr03:14871854-14872600
+
Concanavalin A-like lectin protein kinase family protein
Concanavalin A-like lectin protein kinase family protein
Nbe.v1.1.chr03g11030
Nbe.v1.1.chr03g11030.1
Nbe.v1.s00150g11030
Nbe.v1.1.chr03:36903920-36906691
-
Niben101Scf02904g05011.1
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein
Nbe.v1.1.chr03g18250
Nbe.v1.1.chr03g18250.1
Nbe.v1.s00150g18250
Nbe.v1.1.chr03:66987282-66990359
+
Niben101Scf01184g16001.1
cellulase 3
cellulase 3
Nbe.v1.1.chr03g28660
Nbe.v1.1.chr03g28660.1
Nbe.v1.s00150g28660
Nbe.v1.1.chr03:98266863-98279713
-
Niben101Scf14958g00031.1
3-ketoacyl-acyl carrier protein synthase III
3-ketoacyl-acyl carrier protein synthase III
Nbe.v1.1.chr03g41920
Nbe.v1.1.chr03g41920.1
Nbe.v1.s00150g41920
Nbe.v1.1.chr03:126883433-126906789
-
Niben101Scf10650g01008.1
ARM repeat superfamily protein
NULL
Nbe.v1.1.chr01g04710
Nbe.v1.1.chr01g04710.1
Nbe.v1.s00160g04710
Nbe.v1.1.chr01:117786047-117786838
-
Niben101Scf11125g00024.1
AT-hook motif nuclear-localized protein 20
AT-hook motif nuclear-localized protein 20
Nbe.v1.1.chr01g16610
Nbe.v1.1.chr01g16610.1
Nbe.v1.s00160g16610
Nbe.v1.1.chr01:73094422-73101003
-
Niben101Scf03264g02013.1
topoisomerase II
topoisomerase II
Nbe.v1.1.chr11g30860
Nbe.v1.1.chr11g30860.1
Nbe.v1.s00170g30860
Nbe.v1.1.chr11:39024033-39024392
-
hypothetical protein
NULL
Nbe.v1.1.chr15g06860
Nbe.v1.1.chr15g06860.1
Nbe.v1.s00190g06860
Nbe.v1.1.chr15:154990873-155006595
+
Niben101Scf00790g00006.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Calcium-dependent lipid-binding (CaLB domain) family protein