N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 50

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g03420
Nbe.v1.1.chr17g03420.1
Nbe.v1.s00010g03420
Nbe.v1.1.chr17:176536309-176539816
+
Niben101Scf07391g03013.1
seed storage albumin 5
seed storage albumin 5
Nbe.v1.1.chr17g24910
Nbe.v1.1.chr17g24910.1
Nbe.v1.s00010g24910
Nbe.v1.1.chr17:101048169-101053409
-
Niben101Scf06301g01003.1
aspartic proteinase A1
NULL
Nbe.v1.1.chr17g51920
Nbe.v1.1.chr17g51920.1
Nbe.v1.s00010g51920
Nbe.v1.1.chr17:6997874-6998398
+
Niben101Scf08531g03028.1
No description
Nbe.v1.1.chr06g07230
Nbe.v1.1.chr06g07230.1
Nbe.v1.s00020g07230
Nbe.v1.1.chr06:129891019-129897671
-
Niben101Scf00920g06003.1
LEUNIG-like protein
LEUNIG_homolog
Nbe.v1.1.chr06g17660
Nbe.v1.1.chr06g17660.1
Nbe.v1.s00020g17660
Nbe.v1.1.chr06:91143466-91144629
-
Niben101Scf16258g02004.1
peptidyl serine alpha-galactosyltransferase
NULL
Nbe.v1.1.chr09g12590
Nbe.v1.1.chr09g12590.1
Nbe.v1.s00040g12590
Nbe.v1.1.chr09:105868434-105869427
+
Niben101Scf04523g00009.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr09g12600
Nbe.v1.1.chr09g12600.1
Nbe.v1.s00040g12600
Nbe.v1.1.chr09:105833376-105833918
+
Niben101Scf01591g00022.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr09g25520
Nbe.v1.1.chr09g25520.1
Nbe.v1.s00040g25520
Nbe.v1.1.chr09:63640965-63643036
+
Niben101Scf00016g01009.1
FBD%2C F-box%2C Skp2-like and Leucine Rich Repeat domains containing protein
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
Nbe.v1.1.chr09g29810
Nbe.v1.1.chr09g29810.1
Nbe.v1.s00040g29810
Nbe.v1.1.chr09:48220610-48230499
+
Niben101Scf05351g00013.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr19g29430
Nbe.v1.1.chr19g29430.1
Nbe.v1.s00060g29430
Nbe.v1.1.chr19:41181908-41188601
-
Niben101Scf06280g03012.1
CRM family member 2
CRM family member 2
Nbe.v1.1.chr19g32900
Nbe.v1.1.chr19g32900.1
Nbe.v1.s00060g32900
Nbe.v1.1.chr19:33133461-33134624
-
Niben101Scf16258g02004.1
peptidyl serine alpha-galactosyltransferase
NULL
Nbe.v1.1.chr12g13740
Nbe.v1.1.chr12g13740.1
Nbe.v1.s00070g13740
Nbe.v1.1.chr12:92847389-92849470
+
Niben101Scf02268g13005.1
Tyrosine phosphatase family protein
Tyrosine phosphatase family protein
Nbe.v1.1.chr12g19420
Nbe.v1.1.chr12g19420.1
Nbe.v1.s00070g19420
Nbe.v1.1.chr12:73997883-74002355
+
Niben101Scf03129g06001.1
eukaryotic translation initiation factor 2 gamma subunit
NULL
Nbe.v1.1.chr12g40220
Nbe.v1.1.chr12g40220.1
Nbe.v1.s00070g40220
Nbe.v1.1.chr12:11686991-11688759
+
Niben101Scf00988g06009.1
nitrate transporter 2.4
nitrate transporter 2.4
Nbe.v1.1.chr08g10620
Nbe.v1.1.chr08g10620.1
Nbe.v1.s00080g10620
Nbe.v1.1.chr08:37316315-37316857
+
Niben101Scf01591g00022.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr08g19990
Nbe.v1.1.chr08g19990.1
Nbe.v1.s00080g19990
Nbe.v1.1.chr08:73008376-73018695
-
Niben101Scf03066g00020.1
methyl-CPG-binding domain 9
methyl-CPG-binding domain 9
Nbe.v1.1.chr08g28500
Nbe.v1.1.chr08g28500.1
Nbe.v1.s00080g28500
Nbe.v1.1.chr08:102740567-102744673
-
Niben101Scf12516g02006.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr08g31440
Nbe.v1.1.chr08g31440.1
Nbe.v1.s00080g31440
Nbe.v1.1.chr08:113656611-113660899
-
No description
Nbe.v1.1.chr02g11980
Nbe.v1.1.chr02g11980.1
Nbe.v1.s00090g11980
Nbe.v1.1.chr02:117291787-117293390
+
Niben101Scf01696g02014.1
hypothetical protein
NULL
Nbe.v1.1.chr02g21240
Nbe.v1.1.chr02g21240.1
Nbe.v1.s00090g21240
Nbe.v1.1.chr02:94672621-94674686
-
Niben101Scf06736g02004.1
DNA glycosylase superfamily protein
DNA glycosylase superfamily protein
Nbe.v1.1.chr02g24320
Nbe.v1.1.chr02g24320.1
Nbe.v1.s00090g24320
Nbe.v1.1.chr02:84791986-84792318
-
Niben101Scf07073g01002.1
hypothetical protein
NULL
Nbe.v1.1.chr02g27850
Nbe.v1.1.chr02g27850.1
Nbe.v1.s00090g27850
Nbe.v1.1.chr02:72142614-72144623
-
Niben101Scf10343g01002.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr02g29270
Nbe.v1.1.chr02g29270.1
Nbe.v1.s00090g29270
Nbe.v1.1.chr02:67578798-67585231
+
Niben101Scf03934g05002.1
phytochrome interacting factor 3-like 5
NULL
Nbe.v1.1.chr02g35490
Nbe.v1.1.chr02g35490.1
Nbe.v1.s00090g35490
Nbe.v1.1.chr02:37836707-37838471
-
Niben101Scf01733g03001.1
nitrate transporter 2.4
nitrate transporter 2.4
Nbe.v1.1.chr02g41030
Nbe.v1.1.chr02g41030.1
Nbe.v1.s00090g41030
Nbe.v1.1.chr02:16115838-16117904
-
Niben101Scf01514g00004.1
Tyrosine phosphatase family protein
Tyrosine phosphatase family protein
Nbe.v1.1.chr07g21470
Nbe.v1.1.chr07g21470.1
Nbe.v1.s00100g21470
Nbe.v1.1.chr07:57827294-57834995
-
Niben101Scf06301g01003.1
aspartic proteinase A1
aspartic proteinase A1
Nbe.v1.1.chr07g34730
Nbe.v1.1.chr07g34730.1
Nbe.v1.s00100g34730
Nbe.v1.1.chr07:10213069-10214453
+
Niben101Scf07058g00002.1
protein kinases%3Bubiquitin-protein ligase
protein kinases;ubiquitin-protein ligases
Nbe.v1.1.chr18g14810
Nbe.v1.1.chr18g14810.1
Nbe.v1.s00110g14810
Nbe.v1.1.chr18:92856850-92872238
+
Niben101Scf07313g00002.1
ubiquitin-protein ligase 2
ubiquitin-protein ligase 2
Nbe.v1.1.chr04g02140
Nbe.v1.1.chr04g02140.1
Nbe.v1.s00130g02140
Nbe.v1.1.chr04:126160997-126162160
+
Niben101Scf16258g02004.1
disease resistance protein (TIR-NBS-LRR class) family
disease resistance protein (TIR-NBS-LRR class) family
Nbe.v1.1.chr04g18980
Nbe.v1.1.chr04g18980.1
Nbe.v1.s00130g18980
Nbe.v1.1.chr04:51297740-51303658
+
Niben101Scf05553g01006.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Nbe.v1.1.chr04g23440
Nbe.v1.1.chr04g23440.1
Nbe.v1.s00130g23440
Nbe.v1.1.chr04:35496233-35511432
-
Niben101Scf05029g00004.1
UDP-sugar pyrophosphorylase
UDP-sugar pyrophosphorylase
Nbe.v1.1.chr14g08830
Nbe.v1.1.chr14g08830.1
Nbe.v1.s00140g08830
Nbe.v1.1.chr14:102102536-102120248
-
Niben101Scf05029g00004.1
UDP-sugar pyrophosphorylase
UDP-sugar pyrophosphorylase
Nbe.v1.1.chr14g19970
Nbe.v1.1.chr14g19970.1
Nbe.v1.s00140g19970
Nbe.v1.1.chr14:68038361-68045592
+
Niben101Scf10785g01003.1
no exine formation 1
no exine formation 1
Nbe.v1.1.chr14g26650
Nbe.v1.1.chr14g26650.1
Nbe.v1.s00140g26650
Nbe.v1.1.chr14:47142171-47145642
-
Niben101Scf00199g05004.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr14g29820
Nbe.v1.1.chr14g29820.1
Nbe.v1.s00140g29820
Nbe.v1.1.chr14:37888032-37893874
-
Niben101Scf07350g00008.1
isovaleryl-CoA-dehydrogenase
isovaleryl-CoA-dehydrogenase
Nbe.v1.1.chr14g35050
Nbe.v1.1.chr14g35050.1
Nbe.v1.s00140g35050
Nbe.v1.1.chr14:21511828-21516103
-
Niben101Scf07030g04003.1
Transcription elongation factor (TFIIS) family protein
Transcription elongation factor (TFIIS) family protein
Nbe.v1.1.chr03g01580
Nbe.v1.1.chr03g01580.1
Nbe.v1.s00150g01580
Nbe.v1.1.chr03:3922051-3924748
-
Niben101Scf00747g04006.1
Transcription initiation factor TFIID subunit A
Transcription initiation factor TFIID subunit A
Nbe.v1.1.chr03g19480
Nbe.v1.1.chr03g19480.1
Nbe.v1.s00150g19480
Nbe.v1.1.chr03:71965466-71968626
+
Niben101Scf03953g03001.1
Protein kinase superfamily protein
NULL
Nbe.v1.1.chr03g30350
Nbe.v1.1.chr03g30350.1
Nbe.v1.s00150g30350
Nbe.v1.1.chr03:102726315-102762119
+
Niben101Scf06424g02028.1
embryo defective 2016
embryo defective 2016
Nbe.v1.1.chr01g04360
Nbe.v1.1.chr01g04360.1
Nbe.v1.s00160g04360
Nbe.v1.1.chr01:119048866-119049417
-
Niben101Scf04987g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr01g23650
Nbe.v1.1.chr01g23650.1
Nbe.v1.s00160g23650
Nbe.v1.1.chr01:52357318-52365192
+
Niben101Scf05732g00012.1
hypothetical protein
NULL
Nbe.v1.1.chr11g04530
Nbe.v1.1.chr11g04530.1
Nbe.v1.s00170g04530
Nbe.v1.1.chr11:118871738-118872286
-
Niben101Ctg10402g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr11g20210
Nbe.v1.1.chr11g20210.1
Nbe.v1.s00170g20210
Nbe.v1.1.chr11:77180297-77188232
-
Niben101Scf03937g02017.1
hypothetical protein
NULL
Nbe.v1.1.chr11g24570
Nbe.v1.1.chr11g24570.1
Nbe.v1.s00170g24570
Nbe.v1.1.chr11:62942379-62945453
-
Niben101Scf03350g06021.1
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Nbe.v1.1.chr11g34530
Nbe.v1.1.chr11g34530.1
Nbe.v1.s00170g34530
Nbe.v1.1.chr11:27688128-27694503
-
Niben101Scf05372g01011.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr16g01260
Nbe.v1.1.chr16g01260.1
Nbe.v1.s00180g01260
Nbe.v1.1.chr16:71960839-71964041
-
Niben101Scf02668g00014.1
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
NULL
Nbe.v1.1.chr16g16690
Nbe.v1.1.chr16g16690.1
Nbe.v1.s00180g16690
Nbe.v1.1.chr16:131727198-131729688
+
serine/arginine repetitive matrix-like protein
NULL
Nbe.v1.1.chr16g28880
Nbe.v1.1.chr16g28880.1
Nbe.v1.s00180g28880
Nbe.v1.1.chr16:172962431-172965034
-
Niben101Scf17635g01022.1
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr15g19980
Nbe.v1.1.chr15g19980.1
Nbe.v1.s00190g19980
Nbe.v1.1.chr15:109835889-109837792
-
Niben101Scf06736g02004.1
DNA glycosylase superfamily protein
DNA glycosylase superfamily protein
Nbe.v1.1.chr15g42620
Nbe.v1.1.chr15g42620.1
Nbe.v1.s00210g10270
Nbe.v1.1.chr15:28964330-28965493
+
Niben101Scf16258g02004.1
G protein alpha subunit 1
NULL