N. benthamiana Gene Annotations




List limit is fixed at 20. If Search results is more than 20, some records will not be displayed, so please reconsider your search criteria (recommend) or change List limit value (too many items take much time to display).

"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

Blast searches that can be performed from this page are fixed to eValue 10 or less. A separate window will open and it will take some time before the results are displayed. Please do not close the window until the results are displayed.


Download gene list

Show CDS fasta (from list)

Show AA fasta (from list)

Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 52

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g22660
Nbe.v1.1.chr17g22660.1
Nbe.v1.s00010g22660
Nbe.v1.1.chr17:108598574-108600532
+
Niben101Scf09997g00024.1
RHO guanyl-nucleotide exchange factor 8
RHO guanyl-nucleotide exchange factor 8
Nbe.v1.1.chr17g24810
Nbe.v1.1.chr17g24810.1
Nbe.v1.s00010g24810
Nbe.v1.1.chr17:101396082-101399643
+
Niben101Scf04657g02001.1
telomere repeat binding factor 1
telomere repeat binding factor 1
Nbe.v1.1.chr17g24910
Nbe.v1.1.chr17g24910.1
Nbe.v1.s00010g24910
Nbe.v1.1.chr17:101048169-101053409
-
Niben101Scf06301g01003.1
aspartic proteinase A1
NULL
Nbe.v1.1.chr06g07230
Nbe.v1.1.chr06g07230.1
Nbe.v1.s00020g07230
Nbe.v1.1.chr06:129891019-129897671
-
Niben101Scf00920g06003.1
LEUNIG-like protein
LEUNIG_homolog
Nbe.v1.1.chr06g18280
Nbe.v1.1.chr06g18280.1
Nbe.v1.s00020g18280
Nbe.v1.1.chr06:88268779-88274862
+
Niben101Scf02739g01002.1
time for coffee
time for coffee
Nbe.v1.1.chr06g26850
Nbe.v1.1.chr06g26850.1
Nbe.v1.s00020g26850
Nbe.v1.1.chr06:57208904-57209632
+
Niben101Scf01020g03001.1
AGAMOUS-like 61
AGAMOUS-like 61
Nbe.v1.1.chr06g40060
Nbe.v1.1.chr06g40060.1
Nbe.v1.s00020g40060
Nbe.v1.1.chr06:7059235-7059567
-
THO complex%2C subunit 5
THO complex, subunit 5
Nbe.v1.1.chr05g38470
Nbe.v1.1.chr05g38470.1
Nbe.v1.s00030g38470
Nbe.v1.1.chr05:143293650-143300604
-
Niben101Scf06407g00012.1
actin-related protein 7
actin-related protein 7
Nbe.v1.1.chr09g08060
Nbe.v1.1.chr09g08060.1
Nbe.v1.s00040g08060
Nbe.v1.1.chr09:121425313-121428593
+
Niben101Scf08562g00011.1
Enolase
Enolase
Nbe.v1.1.chr09g12590
Nbe.v1.1.chr09g12590.1
Nbe.v1.s00040g12590
Nbe.v1.1.chr09:105868434-105869427
+
Niben101Scf04523g00009.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr09g12600
Nbe.v1.1.chr09g12600.1
Nbe.v1.s00040g12600
Nbe.v1.1.chr09:105833376-105833918
+
Niben101Scf01591g00022.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr09g29810
Nbe.v1.1.chr09g29810.1
Nbe.v1.s00040g29810
Nbe.v1.1.chr09:48220610-48230499
+
Niben101Scf05351g00013.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr10g00450
Nbe.v1.1.chr10g00450.1
Nbe.v1.s00050g00450
Nbe.v1.1.chr10:1143149-1145122
+
Niben101Scf01905g00001.1
Endomembrane protein 70 protein family
NULL
Nbe.v1.1.chr10g31500
Nbe.v1.1.chr10g31500.1
Nbe.v1.s00050g31500
Nbe.v1.1.chr10:106684156-106685718
-
phosphoenolpyruvate carboxylase 2
NULL
Nbe.v1.1.chr19g37710
Nbe.v1.1.chr19g37710.1
Nbe.v1.s00060g37710
Nbe.v1.1.chr19:20613200-20622992
+
Niben101Scf01960g00004.1
SCAR family protein
SCAR family protein
Nbe.v1.1.chr12g33300
Nbe.v1.1.chr12g33300.1
Nbe.v1.s00070g33300
Nbe.v1.1.chr12:33991918-33997352
+
Niben101Scf00034g01012.1
related to vernalization1 1
NULL
Nbe.v1.1.chr08g10620
Nbe.v1.1.chr08g10620.1
Nbe.v1.s00080g10620
Nbe.v1.1.chr08:37316315-37316857
+
Niben101Scf01591g00022.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr08g28500
Nbe.v1.1.chr08g28500.1
Nbe.v1.s00080g28500
Nbe.v1.1.chr08:102740567-102744673
-
Niben101Scf12516g02006.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr08g31440
Nbe.v1.1.chr08g31440.1
Nbe.v1.s00080g31440
Nbe.v1.1.chr08:113656611-113660899
-
No description
Nbe.v1.1.chr02g10180
Nbe.v1.1.chr02g10180.1
Nbe.v1.s00090g10180
Nbe.v1.1.chr02:120602957-120613079
+
Niben101Scf01960g00004.1
SCAR family protein
SCAR family protein
Nbe.v1.1.chr02g21240
Nbe.v1.1.chr02g21240.1
Nbe.v1.s00090g21240
Nbe.v1.1.chr02:94672621-94674686
-
Niben101Scf06736g02004.1
DNA glycosylase superfamily protein
DNA glycosylase superfamily protein
Nbe.v1.1.chr02g23830
Nbe.v1.1.chr02g23830.1
Nbe.v1.s00090g23830
Nbe.v1.1.chr02:86884168-86886283
+
Niben101Scf19261g00009.1
acyl-CoA-binding domain 3
acyl-CoA-binding domain 3
Nbe.v1.1.chr02g27850
Nbe.v1.1.chr02g27850.1
Nbe.v1.s00090g27850
Nbe.v1.1.chr02:72142614-72144623
-
Niben101Scf10343g01002.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr02g29270
Nbe.v1.1.chr02g29270.1
Nbe.v1.s00090g29270
Nbe.v1.1.chr02:67578798-67585231
+
Niben101Scf03934g05002.1
phytochrome interacting factor 3-like 5
NULL
Nbe.v1.1.chr07g21470
Nbe.v1.1.chr07g21470.1
Nbe.v1.s00100g21470
Nbe.v1.1.chr07:57827294-57834995
-
Niben101Scf06301g01003.1
aspartic proteinase A1
aspartic proteinase A1
Nbe.v1.1.chr07g25010
Nbe.v1.1.chr07g25010.1
Nbe.v1.s00100g25010
Nbe.v1.1.chr07:45240698-45242674
-
Niben101Scf09997g00024.1
RHO guanyl-nucleotide exchange factor 8
RHO guanyl-nucleotide exchange factor 8
Nbe.v1.1.chr07g34730
Nbe.v1.1.chr07g34730.1
Nbe.v1.s00100g34730
Nbe.v1.1.chr07:10213069-10214453
+
Niben101Scf07058g00002.1
protein kinases%3Bubiquitin-protein ligase
protein kinases;ubiquitin-protein ligases
Nbe.v1.1.chr13g05210
Nbe.v1.1.chr13g05210.1
Nbe.v1.s00120g05210
Nbe.v1.1.chr13:17451384-17457076
-
Niben101Scf03306g01011.1
myosin heavy chain-like protein
myosin heavy chain-related
Nbe.v1.1.chr13g44870
Nbe.v1.1.chr13g44870.1
Nbe.v1.s00120g44870
Nbe.v1.1.chr13:127482707-127498336
+
Niben101Scf08272g00018.1
actin-related protein 7
actin-related protein 7
Nbe.v1.1.chr14g00090
Nbe.v1.1.chr14g00090.1
Nbe.v1.s00140g00090
Nbe.v1.1.chr14:133287533-133287838
-
Niben101Scf03150g03001.1
U-box domain-containing protein kinase family protein
U-box domain-containing protein kinase family protein
Nbe.v1.1.chr14g11910
Nbe.v1.1.chr14g11910.1
Nbe.v1.s00140g11910
Nbe.v1.1.chr14:91344224-91346351
+
Niben101Scf05671g00040.1
Peroxidase superfamily protein
Peroxidase superfamily protein
Nbe.v1.1.chr14g26650
Nbe.v1.1.chr14g26650.1
Nbe.v1.s00140g26650
Nbe.v1.1.chr14:47142171-47145642
-
Niben101Scf00199g05004.1
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr14g29820
Nbe.v1.1.chr14g29820.1
Nbe.v1.s00140g29820
Nbe.v1.1.chr14:37888032-37893874
-
Niben101Scf07350g00008.1
isovaleryl-CoA-dehydrogenase
isovaleryl-CoA-dehydrogenase
Nbe.v1.1.chr14g31130
Nbe.v1.1.chr14g31130.1
Nbe.v1.s00140g31130
Nbe.v1.1.chr14:33717721-33721961
-
Niben101Scf02768g00007.1
Histone H3 K4-specific methyltransferase SET7/9 family protein
Histone H3 K4-specific methyltransferase SET7/9 family protein
Nbe.v1.1.chr03g01580
Nbe.v1.1.chr03g01580.1
Nbe.v1.s00150g01580
Nbe.v1.1.chr03:3922051-3924748
-
Niben101Scf00747g04006.1
Transcription initiation factor TFIID subunit A
Transcription initiation factor TFIID subunit A
Nbe.v1.1.chr03g18780
Nbe.v1.1.chr03g18780.1
Nbe.v1.s00150g18780
Nbe.v1.1.chr03:69507707-69508624
-
Niben101Scf07614g02001.1
SBP (S-ribonuclease binding protein) family protein
SBP (S-ribonuclease binding protein) family protein
Nbe.v1.1.chr03g30350
Nbe.v1.1.chr03g30350.1
Nbe.v1.s00150g30350
Nbe.v1.1.chr03:102726315-102762119
+
Niben101Scf06424g02028.1
embryo defective 2016
embryo defective 2016
Nbe.v1.1.chr01g04360
Nbe.v1.1.chr01g04360.1
Nbe.v1.s00160g04360
Nbe.v1.1.chr01:119048866-119049417
-
Niben101Scf04987g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr01g23650
Nbe.v1.1.chr01g23650.1
Nbe.v1.s00160g23650
Nbe.v1.1.chr01:52357318-52365192
+
Niben101Scf05732g00012.1
hypothetical protein
NULL
Nbe.v1.1.chr01g24570
Nbe.v1.1.chr01g24570.1
Nbe.v1.s00160g24570
Nbe.v1.1.chr01:49367126-49371509
+
Niben101Scf04197g01023.1
Leucine-rich receptor-like protein kinase family protein
Leucine-rich receptor-like protein kinase family protein
Nbe.v1.1.chr11g04530
Nbe.v1.1.chr11g04530.1
Nbe.v1.s00170g04530
Nbe.v1.1.chr11:118871738-118872286
-
Niben101Ctg10402g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr11g10280
Nbe.v1.1.chr11g10280.1
Nbe.v1.s00170g10280
Nbe.v1.1.chr11:102595029-102596846
+
Niben101Scf08972g02007.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Nbe.v1.1.chr11g18800
Nbe.v1.1.chr11g18800.1
Nbe.v1.s00170g18800
Nbe.v1.1.chr11:80878850-80882172
+
Niben101Scf20010g00002.1
glutamine-rich protein 23
Encodes a glutamine-rich pentatricopeptide repeat (PPR) protein that functions as a potential regulator of gene expression during early embryogenesis.
Nbe.v1.1.chr11g19310
Nbe.v1.1.chr11g19310.1
Nbe.v1.s00170g19310
Nbe.v1.1.chr11:79594689-79599734
-
Niben101Scf04197g01023.1
Leucine-rich receptor-like protein kinase family protein
Leucine-rich receptor-like protein kinase family protein
Nbe.v1.1.chr11g20210
Nbe.v1.1.chr11g20210.1
Nbe.v1.s00170g20210
Nbe.v1.1.chr11:77180297-77188232
-
Niben101Scf03937g02017.1
hypothetical protein
NULL
Nbe.v1.1.chr11g24570
Nbe.v1.1.chr11g24570.1
Nbe.v1.s00170g24570
Nbe.v1.1.chr11:62942379-62945453
-
Niben101Scf03350g06021.1
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Nbe.v1.1.chr11g34530
Nbe.v1.1.chr11g34530.1
Nbe.v1.s00170g34530
Nbe.v1.1.chr11:27688128-27694503
-
Niben101Scf05372g01011.1
DNA-directed RNA polymerase II
DNA-directed RNA polymerase II
Nbe.v1.1.chr15g01320
Nbe.v1.1.chr15g01320.1
Nbe.v1.s00190g01320
Nbe.v1.1.chr15:173244021-173252119
+
No description
Nbe.v1.1.chr15g19980
Nbe.v1.1.chr15g19980.1
Nbe.v1.s00190g19980
Nbe.v1.1.chr15:109835889-109837792
-
Niben101Scf06736g02004.1
DNA glycosylase superfamily protein
DNA glycosylase superfamily protein
Nbe.v1.1.chr15g21310
Nbe.v1.1.chr15g21310.1
Nbe.v1.s00190g21310
Nbe.v1.1.chr15:105727649-105728878
-
Niben101Scf02118g00013.1
Reticulan like protein B13
Reticulan like protein B13
Nbe.v1.1.chr16g31760
Nbe.v1.1.chr16g31760.1
Nbe.v1.s00200g00350
Nbe.v1.1.chr16:802850-804823
+
Niben101Scf01905g00001.1
Endomembrane protein 70 protein family
NULL
Nbe.v1.1.chr16g50840
Nbe.v1.1.chr16g50840.1
Nbe.v1.s00200g19430
Nbe.v1.1.chr16:61445916-61451744
+
Niben101Scf01636g01006.1
trehalose-phosphatase/synthase 7
NULL