N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 72

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g02050
Nbe.v1.1.chr17g02050.1
Nbe.v1.s00010g02050
Nbe.v1.1.chr17:180039804-180040701
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr17g16110
Nbe.v1.1.chr17g16110.1
Nbe.v1.s00010g16110
Nbe.v1.1.chr17:135929967-135930899
+
Niben101Scf01697g17008.1
lsd one like 1
lsd one like 1
Nbe.v1.1.chr17g17510
Nbe.v1.1.chr17g17510.1
Nbe.v1.s00010g17510
Nbe.v1.1.chr17:129435956-129436351
+
Tetratricopeptide repeat (TPR)-like superfamily protein
Tetratricopeptide repeat (TPR)-like superfamily protein
Nbe.v1.1.chr17g19780
Nbe.v1.1.chr17g19780.1
Nbe.v1.s00010g19780
Nbe.v1.1.chr17:119953172-119957522
+
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit
Ankyrin repeat family protein
Nbe.v1.1.chr17g32500
Nbe.v1.1.chr17g32500.1
Nbe.v1.s00010g32500
Nbe.v1.1.chr17:75045595-75047457
+
RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein
RNA helicase, ATP-dependent, SK12/DOB1 protein
Nbe.v1.1.chr17g42390
Nbe.v1.1.chr17g42390.1
Nbe.v1.s00010g42390
Nbe.v1.1.chr17:35605498-35628019
-
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr06g33910
Nbe.v1.1.chr06g33910.1
Nbe.v1.s00020g33910
Nbe.v1.1.chr06:31128121-31131974
-
Niben101Scf02997g02006.1
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
NULL
Nbe.v1.1.chr05g16490
Nbe.v1.1.chr05g16490.1
Nbe.v1.s00030g16490
Nbe.v1.1.chr05:56264687-56271531
-
Niben101Scf00371g03001.1
Transducin/WD40 repeat-like superfamily protein
Transducin/WD40 repeat-like superfamily protein
Nbe.v1.1.chr05g30500
Nbe.v1.1.chr05g30500.1
Nbe.v1.s00030g30500
Nbe.v1.1.chr05:109041707-109047196
+
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr05g35070
Nbe.v1.1.chr05g35070.1
Nbe.v1.s00030g35070
Nbe.v1.1.chr05:127503121-127504626
-
nucleolin like 2
nucleolin like 2
Nbe.v1.1.chr09g11490
Nbe.v1.1.chr09g11490.1
Nbe.v1.s00040g11490
Nbe.v1.1.chr09:110052627-110060479
-
Niben101Scf01295g02004.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr09g21080
Nbe.v1.1.chr09g21080.1
Nbe.v1.s00040g21080
Nbe.v1.1.chr09:77076094-77081368
-
RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein
RNA helicase, ATP-dependent, SK12/DOB1 protein
Nbe.v1.1.chr09g30540
Nbe.v1.1.chr09g30540.1
Nbe.v1.s00040g30540
Nbe.v1.1.chr09:45832407-45835372
-
Auxin efflux carrier family protein
NULL
Nbe.v1.1.chr10g11900
Nbe.v1.1.chr10g11900.1
Nbe.v1.s00050g11900
Nbe.v1.1.chr10:39628056-39724370
+
Niben101Scf02451g06029.1
topoisomerase 3alpha
topoisomerase 3alpha
Nbe.v1.1.chr10g29970
Nbe.v1.1.chr10g29970.1
Nbe.v1.s00050g29970
Nbe.v1.1.chr10:100822133-100831448
+
Niben101Scf06579g01017.1
1-deoxy-D-xylulose 5-phosphate synthase 3
1-deoxy-D-xylulose 5-phosphate synthase 3
Nbe.v1.1.chr10g32020
Nbe.v1.1.chr10g32020.1
Nbe.v1.s00050g32020
Nbe.v1.1.chr10:108679940-108681340
+
cysteine-rich RECEPTOR-like kinase
NULL
Nbe.v1.1.chr10g39560
Nbe.v1.1.chr10g39560.1
Nbe.v1.s00050g39560
Nbe.v1.1.chr10:135146089-135146526
+
Niben101Scf08998g00004.1
senescence-associated family protein (DUF581)
Protein of unknown function (DUF581)
Nbe.v1.1.chr19g01090
Nbe.v1.1.chr19g01090.1
Nbe.v1.s00060g01090
Nbe.v1.1.chr19:139477572-139479267
+
Niben101Scf00797g15002.1
RING/U-box superfamily protein with ARM repeat domain-containing protein
NULL
Nbe.v1.1.chr19g07060
Nbe.v1.1.chr19g07060.1
Nbe.v1.s00060g07060
Nbe.v1.1.chr19:117087785-117095408
-
No description
Nbe.v1.1.chr19g14000
Nbe.v1.1.chr19g14000.1
Nbe.v1.s00060g14000
Nbe.v1.1.chr19:91042744-91079168
-
Niben101Scf05306g00007.1
structural maintenance of chromosomes protein
NULL
Nbe.v1.1.chr12g09200
Nbe.v1.1.chr12g09200.1
Nbe.v1.s00070g09200
Nbe.v1.1.chr12:110474933-110475181
+
hypothetical protein
NULL
Nbe.v1.1.chr12g16950
Nbe.v1.1.chr12g16950.1
Nbe.v1.s00070g16950
Nbe.v1.1.chr12:81230935-81239288
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr12g18080
Nbe.v1.1.chr12g18080.1
Nbe.v1.s00070g18080
Nbe.v1.1.chr12:78379576-78382656
+
Niben101Scf03138g01049.1
disease resistance family protein / LRR family protein
disease resistance family protein / LRR family protein
Nbe.v1.1.chr12g21030
Nbe.v1.1.chr12g21030.1
Nbe.v1.s00070g21030
Nbe.v1.1.chr12:69825188-69834428
-
Niben101Scf01990g00010.1
G-box binding factor 3
NULL
Nbe.v1.1.chr08g00010
Nbe.v1.1.chr08g00010.1
Nbe.v1.s00080g00010
Nbe.v1.1.chr08:68238-68477
-
alpha/beta-Hydrolases superfamily protein
alpha/beta-Hydrolases superfamily protein
Nbe.v1.1.chr08g03530
Nbe.v1.1.chr08g03530.1
Nbe.v1.s00080g03530
Nbe.v1.1.chr08:10442456-10444729
+
GRAS family transcription factor
GRAS family transcription factor
Nbe.v1.1.chr08g16580
Nbe.v1.1.chr08g16580.1
Nbe.v1.s00080g16580
Nbe.v1.1.chr08:57812222-57828937
+
Niben101Scf01462g02022.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr08g18310
Nbe.v1.1.chr08g18310.1
Nbe.v1.s00080g18310
Nbe.v1.1.chr08:65944237-65947124
-
Niben101Scf07054g04016.1
Ankyrin repeat family protein
Ankyrin repeat family protein
Nbe.v1.1.chr08g38330
Nbe.v1.1.chr08g38330.1
Nbe.v1.s00080g38330
Nbe.v1.1.chr08:138545284-138545559
+
global transcription factor group B1
NULL
Nbe.v1.1.chr02g36440
Nbe.v1.1.chr02g36440.1
Nbe.v1.s00090g36440
Nbe.v1.1.chr02:34338756-34339296
-
G2484-1 protein
NULL
Nbe.v1.1.chr07g10690
Nbe.v1.1.chr07g10690.1
Nbe.v1.s00100g10690
Nbe.v1.1.chr07:98522373-98523359
+
Niben101Scf01582g13009.1
lsd one like 1
NULL
Nbe.v1.1.chr07g16540
Nbe.v1.1.chr07g16540.1
Nbe.v1.s00100g16540
Nbe.v1.1.chr07:75082028-75085267
-
Niben101Scf04406g04023.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Nbe.v1.1.chr07g30650
Nbe.v1.1.chr07g30650.1
Nbe.v1.s00100g30650
Nbe.v1.1.chr07:22952728-22957814
+
kinesin like protein for actin based chloroplast movement 1
kinesin like protein for actin based chloroplast movement 1
Nbe.v1.1.chr07g30660
Nbe.v1.1.chr07g30660.1
Nbe.v1.s00100g30660
Nbe.v1.1.chr07:22896828-22903297
-
Niben101Scf12555g00005.1
embryonic flower 1 (EMF1)
NULL
Nbe.v1.1.chr07g36450
Nbe.v1.1.chr07g36450.1
Nbe.v1.s00100g36450
Nbe.v1.1.chr07:3653983-3655809
+
hypothetical protein
NULL
Nbe.v1.1.chr18g22710
Nbe.v1.1.chr18g22710.1
Nbe.v1.s00110g22710
Nbe.v1.1.chr18:64633416-64636033
-
No description
Nbe.v1.1.chr18g23280
Nbe.v1.1.chr18g23280.1
Nbe.v1.s00110g23280
Nbe.v1.1.chr18:62517090-62517982
-
Niben101Scf08263g01001.1
Ribosomal RNA processing Brix domain protein
Ribosomal RNA processing Brix domain protein
Nbe.v1.1.chr18g24880
Nbe.v1.1.chr18g24880.1
Nbe.v1.s00110g24880
Nbe.v1.1.chr18:56991142-56999092
-
No description
Nbe.v1.1.chr18g31520
Nbe.v1.1.chr18g31520.1
Nbe.v1.s00110g31520
Nbe.v1.1.chr18:35872498-35885816
+
Niben101Scf02824g03013.1
male gametophyte defective 3
male gametophyte defective 3
Nbe.v1.1.chr18g34300
Nbe.v1.1.chr18g34300.1
Nbe.v1.s00110g34300
Nbe.v1.1.chr18:27541702-27542103
+
RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein
RNA helicase, ATP-dependent, SK12/DOB1 protein
Nbe.v1.1.chr18g35720
Nbe.v1.1.chr18g35720.1
Nbe.v1.s00110g35720
Nbe.v1.1.chr18:22584605-22601731
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr13g02120
Nbe.v1.1.chr13g02120.1
Nbe.v1.s00120g02120
Nbe.v1.1.chr13:5974512-6005517
+
Niben101Scf11991g00002.1
actin binding protein
actin binding
Nbe.v1.1.chr13g16280
Nbe.v1.1.chr13g16280.1
Nbe.v1.s00120g16280
Nbe.v1.1.chr13:50784727-50784975
-
WEB family protein (DUF827)
Plant protein of unknown function (DUF827)
Nbe.v1.1.chr13g31420
Nbe.v1.1.chr13g31420.1
Nbe.v1.s00120g31420
Nbe.v1.1.chr13:91024770-91031320
+
Niben101Scf01463g04006.1
protein SUO
BAH domain ;TFIIS helical bundle-like domain
Nbe.v1.1.chr04g16920
Nbe.v1.1.chr04g16920.1
Nbe.v1.s00130g16920
Nbe.v1.1.chr04:58864990-58867902
-
Niben101Scf03449g01013.1
no pollen germination related 1
NULL
Nbe.v1.1.chr04g32420
Nbe.v1.1.chr04g32420.1
Nbe.v1.s00130g32420
Nbe.v1.1.chr04:7384709-7395664
-
Niben101Scf00449g03001.1
P-glycoprotein 20
P-glycoprotein 20
Nbe.v1.1.chr14g18820
Nbe.v1.1.chr14g18820.1
Nbe.v1.s00140g18820
Nbe.v1.1.chr14:70926870-70937599
+
Niben101Scf00449g03001.1
P-glycoprotein 20
P-glycoprotein 20
Nbe.v1.1.chr14g20310
Nbe.v1.1.chr14g20310.1
Nbe.v1.s00140g20310
Nbe.v1.1.chr14:67026948-67027535
+
No description
Nbe.v1.1.chr14g21610
Nbe.v1.1.chr14g21610.1
Nbe.v1.s00140g21610
Nbe.v1.1.chr14:63822454-63829775
+
Niben101Scf15710g00006.1
hydroxyproline-rich glycoprotein family protein
hydroxyproline-rich glycoprotein family protein
Nbe.v1.1.chr14g25110
Nbe.v1.1.chr14g25110.1
Nbe.v1.s00140g25110
Nbe.v1.1.chr14:51740601-51750594
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr03g02440
Nbe.v1.1.chr03g02440.1
Nbe.v1.s00150g02440
Nbe.v1.1.chr03:6808165-6813656
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr03g16240
Nbe.v1.1.chr03g16240.1
Nbe.v1.s00150g16240
Nbe.v1.1.chr03:59352317-59358518
+
elongation factor family protein
elongation factor family protein
Nbe.v1.1.chr03g40370
Nbe.v1.1.chr03g40370.1
Nbe.v1.s00150g40370
Nbe.v1.1.chr03:123709180-123726339
-
Niben101Scf00725g04002.1
Transmembrane Fragile-X-F-associated protein
Transmembrane Fragile-X-F-associated protein
Nbe.v1.1.chr01g04360
Nbe.v1.1.chr01g04360.1
Nbe.v1.s00160g04360
Nbe.v1.1.chr01:119048866-119049417
-
Niben101Scf04987g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr01g13290
Nbe.v1.1.chr01g13290.1
Nbe.v1.s00160g13290
Nbe.v1.1.chr01:85151311-85151613
-
FAD-binding Berberine family protein
FAD-binding Berberine family protein
Nbe.v1.1.chr01g28150
Nbe.v1.1.chr01g28150.1
Nbe.v1.s00160g28150
Nbe.v1.1.chr01:40504149-40509580
+
Niben101Scf00332g02013.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr01g32390
Nbe.v1.1.chr01g32390.1
Nbe.v1.s00160g32390
Nbe.v1.1.chr01:31654569-31654838
-
HXXXD-type acyl-transferase family protein
NULL
Nbe.v1.1.chr01g44370
Nbe.v1.1.chr01g44370.1
Nbe.v1.s00160g44370
Nbe.v1.1.chr01:3499435-3499983
+
Niben101Scf04664g04021.1
prostatic spermine-binding-like protein
NULL
Nbe.v1.1.chr11g04530
Nbe.v1.1.chr11g04530.1
Nbe.v1.s00170g04530
Nbe.v1.1.chr11:118871738-118872286
-
Niben101Ctg10402g00001.1
RNA polymerase Rpb7-like%2C N-terminal domain-containing protein
NULL
Nbe.v1.1.chr11g16140
Nbe.v1.1.chr11g16140.1
Nbe.v1.s00170g16140
Nbe.v1.1.chr11:87904328-87904876
+
Niben101Scf01190g01009.1
prostatic spermine-binding-like protein
NULL
Nbe.v1.1.chr11g20320
Nbe.v1.1.chr11g20320.1
Nbe.v1.s00170g20320
Nbe.v1.1.chr11:76878396-76901416
-
Niben101Scf00646g01001.1
separase
NULL
Nbe.v1.1.chr11g37520
Nbe.v1.1.chr11g37520.1
Nbe.v1.s00170g37520
Nbe.v1.1.chr11:17512235-17513253
-
Subtilase family protein
Subtilase family protein
Nbe.v1.1.chr11g39040
Nbe.v1.1.chr11g39040.1
Nbe.v1.s00170g39040
Nbe.v1.1.chr11:13225869-13232188
-
Niben101Scf04276g00003.1
GPI-anchored adhesin-like protein
NULL
Nbe.v1.1.chr16g29660
Nbe.v1.1.chr16g29660.1
Nbe.v1.s00180g29660
Nbe.v1.1.chr16:175832142-175839041
+
Niben101Scf03365g05019.1
Copia-like polyprotein/retrotransposon
NULL
Nbe.v1.1.chr15g02950
Nbe.v1.1.chr15g02950.1
Nbe.v1.s00190g02950
Nbe.v1.1.chr15:168535573-168541689
-
Alpha amylase family protein
Alpha amylase family protein
Nbe.v1.1.chr15g18460
Nbe.v1.1.chr15g18460.1
Nbe.v1.s00190g18460
Nbe.v1.1.chr15:114233635-114237011
-
Niben101Scf06986g00012.1
Sucrase/ferredoxin-like family protein
Sucrase/ferredoxin-like family protein
Nbe.v1.1.chr15g21050
Nbe.v1.1.chr15g21050.1
Nbe.v1.s00190g21050
Nbe.v1.1.chr15:106640125-106646790
+
hypothetical protein (DUF577)
Family of unknown function (DUF577)
Nbe.v1.1.chr15g23800
Nbe.v1.1.chr15g23800.1
Nbe.v1.s00190g23800
Nbe.v1.1.chr15:95498319-95498717
+
casein lytic proteinase B4
casein lytic proteinase B4
Nbe.v1.1.chr16g35430
Nbe.v1.1.chr16g35430.1
Nbe.v1.s00200g04020
Nbe.v1.1.chr16:10148388-10154425
+
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Nbe.v1.1.chr16g40610
Nbe.v1.1.chr16g40610.1
Nbe.v1.s00200g09200
Nbe.v1.1.chr16:24290185-24291094
-
nitrite reductase 1
nitrite reductase 1
Nbe.v1.1.chr15g34780
Nbe.v1.1.chr15g34780.1
Nbe.v1.s00210g02430
Nbe.v1.1.chr15:58216962-58226742
-
zinc transporter 1 precursor
zinc transporter 1 precursor
Nbe.v1.1.chr15g41900
Nbe.v1.1.chr15g41900.1
Nbe.v1.s00210g09550
Nbe.v1.1.chr15:31333893-31337889
-
Niben101Scf03018g09011.1
cation/hydrogen exchanger 28
cation/hydrogen exchanger 28