N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 38

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr17g21840
Nbe.v1.1.chr17g21840.1
Nbe.v1.s00010g21840
Nbe.v1.1.chr17:111794610-111796511
-
Niben101Scf02370g02007.1
Ribosomal protein L10 family protein
Ribosomal protein L10 family protein
Nbe.v1.1.chr05g20160
Nbe.v1.1.chr05g20160.1
Nbe.v1.s00030g20160
Nbe.v1.1.chr05:69741471-69741911
+
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Nbe.v1.1.chr05g20270
Nbe.v1.1.chr05g20270.1
Nbe.v1.s00030g20270
Nbe.v1.1.chr05:70049261-70080999
+
Niben101Scf01374g15015.1
vacuoleless1 (VCL1)
vacuoleless1 (VCL1)
Nbe.v1.1.chr09g29820
Nbe.v1.1.chr09g29820.1
Nbe.v1.s00040g29820
Nbe.v1.1.chr09:48216773-48218545
+
Niben101Scf05351g00004.1
proline-rich protein 2
proline-rich protein 2
Nbe.v1.1.chr10g24710
Nbe.v1.1.chr10g24710.1
Nbe.v1.s00050g24710
Nbe.v1.1.chr10:83610547-83618128
+
Niben101Scf01047g00001.1
phosphoglucosamine mutase-like protein
phosphoglucosamine mutase-related
Nbe.v1.1.chr10g26270
Nbe.v1.1.chr10g26270.1
Nbe.v1.s00050g26270
Nbe.v1.1.chr10:88247842-88248328
+
Niben101Scf04992g00009.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr10g26280
Nbe.v1.1.chr10g26280.1
Nbe.v1.s00050g26280
Nbe.v1.1.chr10:88265456-88268257
+
Niben101Scf04992g00009.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr19g14950
Nbe.v1.1.chr19g14950.1
Nbe.v1.s00060g14950
Nbe.v1.1.chr19:88602654-88605692
+
Niben101Scf02771g01007.1
heat shock protein 70
heat shock protein 70
Nbe.v1.1.chr08g16580
Nbe.v1.1.chr08g16580.1
Nbe.v1.s00080g16580
Nbe.v1.1.chr08:57812222-57828937
+
Niben101Scf01462g02022.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr08g29920
Nbe.v1.1.chr08g29920.1
Nbe.v1.s00080g29920
Nbe.v1.1.chr08:108240672-108243105
+
Niben101Scf18662g00010.1
Basic-leucine zipper (bZIP) transcription factor family protein
Basic-leucine zipper (bZIP) transcription factor family protein
Nbe.v1.1.chr08g33900
Nbe.v1.1.chr08g33900.1
Nbe.v1.s00080g33900
Nbe.v1.1.chr08:122923047-122925895
-
Niben101Scf01721g05007.1
K+ uptake transporter 3
K+ uptake transporter 3
Nbe.v1.1.chr02g07990
Nbe.v1.1.chr02g07990.1
Nbe.v1.s00090g07990
Nbe.v1.1.chr02:126029415-126030095
-
Niben101Scf00751g06010.1
ENTH/ANTH/VHS superfamily protein
ENTH/ANTH/VHS superfamily protein
Nbe.v1.1.chr02g09220
Nbe.v1.1.chr02g09220.1
Nbe.v1.s00090g09220
Nbe.v1.1.chr02:122777137-122778231
+
Niben101Scf01008g03019.1
GATA zinc finger protein
NULL
Nbe.v1.1.chr02g28450
Nbe.v1.1.chr02g28450.1
Nbe.v1.s00090g28450
Nbe.v1.1.chr02:69868498-69868770
+
Niben101Scf03842g09002.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr02g31020
Nbe.v1.1.chr02g31020.1
Nbe.v1.s00090g31020
Nbe.v1.1.chr02:60818453-60818971
-
Niben101Scf01863g01013.1
hypothetical protein
NULL
Nbe.v1.1.chr18g15970
Nbe.v1.1.chr18g15970.1
Nbe.v1.s00110g15970
Nbe.v1.1.chr18:88972799-88973242
+
Niben101Scf00276g05017.1
hypothetical protein
NULL
Nbe.v1.1.chr18g20230
Nbe.v1.1.chr18g20230.1
Nbe.v1.s00110g20230
Nbe.v1.1.chr18:72701498-72707048
-
Niben101Scf06806g04012.1
K+ uptake transporter 3
K+ uptake transporter 3
Nbe.v1.1.chr18g23300
Nbe.v1.1.chr18g23300.1
Nbe.v1.s00110g23300
Nbe.v1.1.chr18:62513625-62514176
-
26S proteasome regulatory subunit S2 1B
26S proteasome regulatory subunit S2 1B
Nbe.v1.1.chr13g20220
Nbe.v1.1.chr13g20220.1
Nbe.v1.s00120g20220
Nbe.v1.1.chr13:63505989-63509101
+
Niben101Scf13608g00002.1
Oxoglutarate/iron-dependent oxygenase
Oxoglutarate/iron-dependent oxygenase
Nbe.v1.1.chr13g34630
Nbe.v1.1.chr13g34630.1
Nbe.v1.s00120g34630
Nbe.v1.1.chr13:98502124-98511918
-
Niben101Scf01374g15015.1
vacuoleless1 (VCL1)
vacuoleless1 (VCL1)
Nbe.v1.1.chr04g00830
Nbe.v1.1.chr04g00830.1
Nbe.v1.s00130g00830
Nbe.v1.1.chr04:132689368-132704532
+
Niben101Scf04992g00009.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr04g22360
Nbe.v1.1.chr04g22360.1
Nbe.v1.s00130g22360
Nbe.v1.1.chr04:39617887-39623152
+
Niben101Scf01735g00005.1
nitrate reductase 2
nitrate reductase 2
Nbe.v1.1.chr04g23300
Nbe.v1.1.chr04g23300.1
Nbe.v1.s00130g23300
Nbe.v1.1.chr04:36175800-36176123
+
RELA/SPOT homolog 1
NULL
Nbe.v1.1.chr04g31470
Nbe.v1.1.chr04g31470.1
Nbe.v1.s00130g31470
Nbe.v1.1.chr04:9821548-9822834
-
Niben101Scf01818g08019.1
Integrase-type DNA-binding superfamily protein
Integrase-type DNA-binding superfamily protein
Nbe.v1.1.chr03g33440
Nbe.v1.1.chr03g33440.1
Nbe.v1.s00150g33440
Nbe.v1.1.chr03:109199281-109206819
-
Niben101Scf00024g02021.1
DDT domain superfamily
NULL
Nbe.v1.1.chr03g43130
Nbe.v1.1.chr03g43130.1
Nbe.v1.s00150g43130
Nbe.v1.1.chr03:129533831-129541086
+
Niben101Scf07798g01001.1
Transcription initiation factor TFIID subunit A
Transcription initiation factor TFIID subunit A
Nbe.v1.1.chr01g03090
Nbe.v1.1.chr01g03090.1
Nbe.v1.s00160g03090
Nbe.v1.1.chr01:123390949-123404039
+
Niben101Scf03208g07003.1
26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Nbe.v1.1.chr01g20940
Nbe.v1.1.chr01g20940.1
Nbe.v1.s00160g20940
Nbe.v1.1.chr01:59508070-59508408
-
Subtilisin-like serine endopeptidase family protein
Subtilisin-like serine endopeptidase family protein
Nbe.v1.1.chr01g33800
Nbe.v1.1.chr01g33800.1
Nbe.v1.s00160g33800
Nbe.v1.1.chr01:27955343-27960963
-
Niben101Scf08690g02018.1
embryo defective 1703
embryo defective 1703
Nbe.v1.1.chr11g06460
Nbe.v1.1.chr11g06460.1
Nbe.v1.s00170g06460
Nbe.v1.1.chr11:113339741-113351476
+
Niben101Scf02384g00024.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr11g08290
Nbe.v1.1.chr11g08290.1
Nbe.v1.s00170g08290
Nbe.v1.1.chr11:108197752-108204525
+
Niben101Scf04339g04001.1
SMAD/FHA domain-containing protein
SMAD/FHA domain-containing protein
Nbe.v1.1.chr15g00910
Nbe.v1.1.chr15g00910.1
Nbe.v1.s00190g00910
Nbe.v1.1.chr15:174378324-174382640
-
Niben101Scf05617g00005.1
PHE ammonia lyase 1
PHE ammonia lyase 1
Nbe.v1.1.chr15g02570
Nbe.v1.1.chr15g02570.1
Nbe.v1.s00190g02570
Nbe.v1.1.chr15:169548993-169559180
+
Niben101Scf04992g00009.1
26S proteasome regulatory subunit S2 1A
26S proteasome regulatory subunit S2 1A
Nbe.v1.1.chr15g20450
Nbe.v1.1.chr15g20450.1
Nbe.v1.s00190g20450
Nbe.v1.1.chr15:108604709-108607755
+
Niben101Scf05378g01017.1
global transcription factor C
NULL
Nbe.v1.1.chr15g24250
Nbe.v1.1.chr15g24250.1
Nbe.v1.s00190g24250
Nbe.v1.1.chr15:93934227-93944749
+
Niben101Scf01146g02016.1
26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Nbe.v1.1.chr16g45890
Nbe.v1.1.chr16g45890.1
Nbe.v1.s00200g14480
Nbe.v1.1.chr16:40706875-40719730
+
Niben101Scf08127g06001.1
2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein
magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
Nbe.v1.1.chr15g41080
Nbe.v1.1.chr15g41080.1
Nbe.v1.s00210g08730
Nbe.v1.1.chr15:34419400-34419771
+
polygalacturonase inhibiting protein 2
polygalacturonase inhibiting protein 2
Nbe.v1.1.chr15g45880
Nbe.v1.1.chr15g45880.1
Nbe.v1.s00210g13530
Nbe.v1.1.chr15:16366868-16369945
+
Niben101Scf12154g01009.1
heat shock cognate protein 70-1
heat shock cognate protein 70-1