N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 7

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
6815	Nbe.v1.1.chr09g28100	Nbe.v1.1.chr09g28100.1	Nbe.v1.s00040g28100	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:54851013-54859227	+	Niben101Scf03710g11042.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
74078	Nbe.v1.1.chr04g22970	Nbe.v1.1.chr04g22970.1	Nbe.v1.s00130g22970	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr04:37504528-37513351	-	Niben101Scf03028g01016.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
13431	Nbe.v1.1.chr14g08040	Nbe.v1.1.chr14g08040.1	Nbe.v1.s00140g08040	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:105228789-105237675	-	Niben101Scf03028g01016.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
15392	Nbe.v1.1.chr14g27670	Nbe.v1.1.chr14g27670.1	Nbe.v1.s00140g27670	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:43951037-43951910	+	Niben101Scf02197g01010.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
15393	Nbe.v1.1.chr14g27680	Nbe.v1.1.chr14g27680.1	Nbe.v1.s00140g27680	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:43948353-43950994	+	Niben101Scf02197g01010.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
15394	Nbe.v1.1.chr14g27690	Nbe.v1.1.chr14g27690.1	Nbe.v1.s00140g27690	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:43945803-43948314	+	Niben101Scf02197g01010.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
15395	Nbe.v1.1.chr14g27700	Nbe.v1.1.chr14g27700.1	Nbe.v1.s00140g27700	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:43943151-43945650	+	Niben101Scf02197g01010.1	AT1G77460.4	CELLULOSE SYNTHASE INTERACTIVE 3	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries