N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 7

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
908	Nbe.v1.1.chr08g09080	Nbe.v1.1.chr08g09080.1	Nbe.v1.s00080g09080	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:32592015-32594247	-	Niben101Scf09742g00030.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
3762	Nbe.v1.1.chr08g37600	Nbe.v1.1.chr08g37600.1	Nbe.v1.s00080g37600	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:136154914-136160166	+	Niben101Scf01980g12016.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
54973	Nbe.v1.1.chr18g17220	Nbe.v1.1.chr18g17220.1	Nbe.v1.s00110g17220	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr18:83712767-83718267	-	Niben101Scf02367g05039.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
56514	Nbe.v1.1.chr18g32630	Nbe.v1.1.chr18g32630.1	Nbe.v1.s00110g32630	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr18:32999917-33002832	-	Niben101Scf00033g07005.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
48897	Nbe.v1.1.chr13g05560	Nbe.v1.1.chr13g05560.1	Nbe.v1.s00120g05560	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr13:19173629-19174766	+	Niben101Scf21484g01001.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
73702	Nbe.v1.1.chr04g19200	Nbe.v1.1.chr04g19200.1	Nbe.v1.s00130g19200	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr04:50406573-50411279	-	Niben101Scf02537g02006.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
61537	Nbe.v1.1.chr16g19320	Nbe.v1.1.chr16g19320.1	Nbe.v1.s00180g19320	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr16:141660611-141672306	-	Niben101Scf01259g00007.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries