N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

List limit for regex, default = 20

List limit is fixed at 20. If Search results is more than 20, some records will not be displayed, so please reconsider your search criteria (recommend) or change List limit value (too many items take much time to display).

"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

Blast searches that can be performed from this page are fixed to eValue 10 or less. A separate window will open and it will take some time before the results are displayed. Please do not close the window until the results are displayed.

Download gene list

Show CDS fasta (from list)

Show AA fasta (from list)

Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 6

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
4745	Nbe.v1.1.chr09g07360	Nbe.v1.1.chr09g07360.1	Nbe.v1.s00040g07360	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:123584446-123587571	-		AT1G45332.1	Translation elongation factor EFG/EF2 protein	Translation elongation factor EFG/EF2 protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
12180	Nbe.v1.1.chr12g40260	Nbe.v1.1.chr12g40260.1	Nbe.v1.s00070g40260	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr12:11492281-11529762	-	Niben101Scf00988g04026.1	AT1G08060.2	ATP-dependent helicase family protein	ATP-dependent helicase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
48208	Nbe.v1.1.chr07g36050	Nbe.v1.1.chr07g36050.1	Nbe.v1.s00100g36050	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr07:4851167-4857109	+	Niben101Scf00988g04026.1			No description	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
36113	Nbe.v1.1.chr03g01940	Nbe.v1.1.chr03g01940.1	Nbe.v1.s00150g01940	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr03:5020984-5022707	+		AT3G12200.1	NIMA-related kinase 7	NIMA-related kinase 7	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64365	Nbe.v1.1.chr15g16070	Nbe.v1.1.chr15g16070.1	Nbe.v1.s00190g16070	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:125989428-125991577	+	Niben101Scf00279g01012.1	AT1G03330.1	Small nuclear ribonucleoprotein family protein	Small nuclear ribonucleoprotein family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64770	Nbe.v1.1.chr15g20120	Nbe.v1.1.chr15g20120.1	Nbe.v1.s00190g20120	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:109385196-109385972	-		AT5G60530.1	late embryogenesis abundant protein-related / LEA protein-like protein	late embryogenesis abundant protein-related / LEA protein-related	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries