N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 10

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr10g18720
Nbe.v1.1.chr10g18720.1
Nbe.v1.s00050g18720
Nbe.v1.1.chr10:64827441-64832850
-
Niben101Scf09052g03004.1
PIF1 helicase
PIF1 helicase
Nbe.v1.1.chr10g18730
Nbe.v1.1.chr10g18730.1
Nbe.v1.s00050g18730
Nbe.v1.1.chr10:64842555-64843293
-
Niben101Scf09052g03004.1
Eukaryotic aspartyl protease family protein
Eukaryotic aspartyl protease family protein
Nbe.v1.1.chr19g19870
Nbe.v1.1.chr19g19870.1
Nbe.v1.s00060g19870
Nbe.v1.1.chr19:72217872-72218446
-
Niben101Scf06909g02011.1
Nucleic acid-binding%2C OB-fold-like protein
Nucleic acid-binding, OB-fold-like protein
Nbe.v1.1.chr02g39430
Nbe.v1.1.chr02g39430.1
Nbe.v1.s00090g39430
Nbe.v1.1.chr02:23031682-23040631
-
Niben101Scf09052g03004.1
calmodulin-binding protein (DUF1645)
Protein of unknown function (DUF1645)
Nbe.v1.1.chr07g33680
Nbe.v1.1.chr07g33680.1
Nbe.v1.s00100g33680
Nbe.v1.1.chr07:13219995-13220243
+
Niben101Scf09052g03004.1
Glycosyl hydrolase superfamily protein
Glycosyl hydrolase superfamily protein
Nbe.v1.1.chr18g05120
Nbe.v1.1.chr18g05120.1
Nbe.v1.s00110g05120
Nbe.v1.1.chr18:125453338-125453827
-
Niben101Scf06909g02011.1
3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
Nbe.v1.1.chr14g23290
Nbe.v1.1.chr14g23290.1
Nbe.v1.s00140g23290
Nbe.v1.1.chr14:58463689-58464298
+
Niben101Scf09052g03004.1
Protein kinase superfamily protein
Protein kinase superfamily protein
Nbe.v1.1.chr16g18070
Nbe.v1.1.chr16g18070.1
Nbe.v1.s00180g18070
Nbe.v1.1.chr16:136293350-136299499
-
Niben101Scf09052g03004.1
sucrose nonfermenting-like protein
homolog of yeast sucrose nonfermenting 4
Nbe.v1.1.chr15g16080
Nbe.v1.1.chr15g16080.1
Nbe.v1.s00190g16080
Nbe.v1.1.chr15:125972797-125973039
+
Niben101Scf09052g03004.1
glutamate synthase 2
glutamate synthase 2
Nbe.v1.1.chr15g16420
Nbe.v1.1.chr15g16420.1
Nbe.v1.s00190g16420
Nbe.v1.1.chr15:124642820-124658053
+
Niben101Scf09052g03004.1
GATA transcription factor 26
GATA transcription factor 26