N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 9

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
40662	Nbe.v1.1.chr06g03270	Nbe.v1.1.chr06g03270.1	Nbe.v1.s00020g03270	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:142334673-142345286	-	Niben101Scf00571g10002.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
40706	Nbe.v1.1.chr06g03710	Nbe.v1.1.chr06g03710.1	Nbe.v1.s00020g03710	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:141120641-141123731	-	Niben101Scf03175g00001.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
29	Nbe.v1.1.chr08g00290	Nbe.v1.1.chr08g00290.1	Nbe.v1.s00080g00290	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:952774-957371	-	Niben101Scf01010g00009.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
78997	Nbe.v1.1.chr02g36850	Nbe.v1.1.chr02g36850.1	Nbe.v1.s00090g36850	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr02:32131280-32140114	+	Niben101Scf01010g00009.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
57442	Nbe.v1.1.chr18g41930	Nbe.v1.1.chr18g41930.1	Nbe.v1.s00110g41930	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr18:671853-672584	+	Niben101Scf05434g03013.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
49090	Nbe.v1.1.chr13g07500	Nbe.v1.1.chr13g07500.1	Nbe.v1.s00120g07500	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr13:25365049-25375552	+	Niben101Scf06890g00008.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
13333	Nbe.v1.1.chr14g07060	Nbe.v1.1.chr14g07060.1	Nbe.v1.s00140g07060	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr14:107970396-107970845	+	Niben101Scf01010g00009.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
22135	Nbe.v1.1.chr11g06980	Nbe.v1.1.chr11g06980.1	Nbe.v1.s00170g06980	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr11:111521200-111521700	+	Niben101Scf02662g00022.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
62137	Nbe.v1.1.chr16g25290	Nbe.v1.1.chr16g25290.1	Nbe.v1.s00180g25290	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr16:160329362-160336555	+	Niben101Scf00571g10002.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries