N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 9

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
40706	Nbe.v1.1.chr06g03710	Nbe.v1.1.chr06g03710.1	Nbe.v1.s00020g03710	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr06:141120641-141123731	-	Niben101Scf03175g00001.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
4745	Nbe.v1.1.chr09g07360	Nbe.v1.1.chr09g07360.1	Nbe.v1.s00040g07360	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:123584446-123587571	-		AT1G45332.1	Translation elongation factor EFG/EF2 protein	Translation elongation factor EFG/EF2 protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
29	Nbe.v1.1.chr08g00290	Nbe.v1.1.chr08g00290.1	Nbe.v1.s00080g00290	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:952774-957371	-	Niben101Scf01010g00009.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
75809	Nbe.v1.1.chr02g04870	Nbe.v1.1.chr02g04870.1	Nbe.v1.s00090g04870	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr02:132803107-132803828	+		AT2G05642.1	Nucleic acid-binding%2C OB-fold-like protein	Nucleic acid-binding, OB-fold-like protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
78997	Nbe.v1.1.chr02g36850	Nbe.v1.1.chr02g36850.1	Nbe.v1.s00090g36850	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr02:32131280-32140114	+	Niben101Scf01010g00009.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
57442	Nbe.v1.1.chr18g41930	Nbe.v1.1.chr18g41930.1	Nbe.v1.s00110g41930	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr18:671853-672584	+	Niben101Scf05434g03013.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
22136	Nbe.v1.1.chr11g06990	Nbe.v1.1.chr11g06990.1	Nbe.v1.s00170g06990	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr11:111510970-111521151	+	Niben101Scf02662g00022.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64694	Nbe.v1.1.chr15g19360	Nbe.v1.1.chr15g19360.1	Nbe.v1.s00190g19360	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:111578662-111585492	+		AT3G51700.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64808	Nbe.v1.1.chr15g20500	Nbe.v1.1.chr15g20500.1	Nbe.v1.s00190g20500	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:108450668-108453450	-		AT5G40153.1	peroxidase	NULL	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries