N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 5

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
3926	Nbe.v1.1.chr08g39240	Nbe.v1.1.chr08g39240.1	Nbe.v1.s00080g39240	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr08:140889974-140899102	-	Niben101Scf07579g01003.1	AT5G50970.1	transducin family protein / WD-40 repeat family protein	transducin family protein / WD-40 repeat family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
48897	Nbe.v1.1.chr13g05560	Nbe.v1.1.chr13g05560.1	Nbe.v1.s00120g05560	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr13:19173629-19174766	+	Niben101Scf21484g01001.1	AT1G22460.1	O-fucosyltransferase family protein	O-fucosyltransferase family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
72720	Nbe.v1.1.chr04g09390	Nbe.v1.1.chr04g09390.1	Nbe.v1.s00130g09390	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr04:88365202-88366380	-		AT3G51690.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
27049	Nbe.v1.1.chr01g11610	Nbe.v1.1.chr01g11610.1	Nbe.v1.s00160g11610	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr01:91636307-91640569	-	Niben101Scf07579g01003.1	AT5G50970.1	transducin family protein / WD-40 repeat family protein	transducin family protein / WD-40 repeat family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
62849	Nbe.v1.1.chr15g00880	Nbe.v1.1.chr15g00880.1	Nbe.v1.s00190g00880	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:174459542-174460419	-		AT3G51700.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries