N. benthamiana Gene Annotations

Nbe_v1.1 Gene ID

Nbe_v1.1 Gene model

Nbe.v1 Gene ID

Niben1.01 Gene ID

At gene ID

At Gene description (regex)

List limit for regex, default = 20

List limit is fixed at 20. If Search results is more than 20, some records will not be displayed, so please reconsider your search criteria (recommend) or change List limit value (too many items take much time to display).

"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

Blast searches that can be performed from this page are fixed to eValue 10 or less. A separate window will open and it will take some time before the results are displayed. Please do not close the window until the results are displayed.

Download gene list

Show CDS fasta (from list)

Show AA fasta (from list)

Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles

Search results: 8

ID	Nbe.v1.1 gene ID	Nbe.v1.1 gene model	Nbe.v1 gene ID	Sequence	IGV	Locus	Direction	Niben1.01 gene ID	At gene model	At gene description (TAIR10)	At gene description (ARAPORT11)	Blast	Expression profiles
4745	Nbe.v1.1.chr09g07360	Nbe.v1.1.chr09g07360.1	Nbe.v1.s00040g07360	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:123584446-123587571	-		AT1G45332.1	Translation elongation factor EFG/EF2 protein	Translation elongation factor EFG/EF2 protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
4746	Nbe.v1.1.chr09g07370	Nbe.v1.1.chr09g07370.1	Nbe.v1.s00040g07370	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr09:123578573-123581809	-	Niben101Scf04632g09003.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
49090	Nbe.v1.1.chr13g07500	Nbe.v1.1.chr13g07500.1	Nbe.v1.s00120g07500	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr13:25365049-25375552	+	Niben101Scf06890g00008.1	AT5G19760.1	Mitochondrial substrate carrier family protein	Mitochondrial substrate carrier family protein	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
26604	Nbe.v1.1.chr01g07140	Nbe.v1.1.chr01g07140.1	Nbe.v1.s00160g07140	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr01:107741374-107741898	+		AT1G55860.1	LOW protein: E3 ubiquitin ligase-like protein	ubiquitin-protein ligase 1	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
62849	Nbe.v1.1.chr15g00880	Nbe.v1.1.chr15g00880.1	Nbe.v1.s00190g00880	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:174459542-174460419	-		AT3G51700.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64694	Nbe.v1.1.chr15g19360	Nbe.v1.1.chr15g19360.1	Nbe.v1.s00190g19360	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:111578662-111585492	+		AT3G51700.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
64770	Nbe.v1.1.chr15g20120	Nbe.v1.1.chr15g20120.1	Nbe.v1.s00190g20120	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:109385196-109385972	-		AT5G60530.1	late embryogenesis abundant protein-related / LEA protein-like protein	late embryogenesis abundant protein-related / LEA protein-related	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries
65607	Nbe.v1.1.chr15g28470	Nbe.v1.1.chr15g28470.1	Nbe.v1.s00190g28470	Sequence CDS Amino Acid Genome (+-10 kb)	IGV	Nbe.v1.1.chr15:77380811-77384562	-		AT3G51700.1	PIF1 helicase	PIF1 helicase	blast Nbe_v1.1 genome Nbe_v1.1 transcripts blastn Nbe_v1.1 transcripts tblastx Niben1.01 transcript blastn Niben1.01 transcript tblastx At transcript blastn At transcript tblastx	Expression Profiles Grafting timeseries