N. benthamiana Gene Annotations




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"At transcript ID" indicate the top hit genes in the tBlastx search of the CDS sequence of Nbe.v1 against ARAPORT11.

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Show CDS fasta (from list)

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Phylogenetic analysis (CDS)

Phylogenetic analysis (AA)

Expression profiles



Search results: 9

ID
Nbe.v1.1 gene ID
Nbe.v1.1 gene model
Nbe.v1 gene ID
Sequence
IGV
Locus
Direction
Niben1.01 gene ID
At gene model
At gene description (TAIR10)
At gene description (ARAPORT11)
Blast
Expression profiles
Nbe.v1.1.chr09g07360
Nbe.v1.1.chr09g07360.1
Nbe.v1.s00040g07360
Nbe.v1.1.chr09:123584446-123587571
-
Translation elongation factor EFG/EF2 protein
Translation elongation factor EFG/EF2 protein
Nbe.v1.1.chr07g36050
Nbe.v1.1.chr07g36050.1
Nbe.v1.s00100g36050
Nbe.v1.1.chr07:4851167-4857109
+
Niben101Scf00988g04026.1
No description
Nbe.v1.1.chr01g07140
Nbe.v1.1.chr01g07140.1
Nbe.v1.s00160g07140
Nbe.v1.1.chr01:107741374-107741898
+
LOW protein: E3 ubiquitin ligase-like protein
ubiquitin-protein ligase 1
Nbe.v1.1.chr11g06990
Nbe.v1.1.chr11g06990.1
Nbe.v1.s00170g06990
Nbe.v1.1.chr11:111510970-111521151
+
Niben101Scf02662g00022.1
Mitochondrial substrate carrier family protein
Mitochondrial substrate carrier family protein
Nbe.v1.1.chr11g14530
Nbe.v1.1.chr11g14530.1
Nbe.v1.s00170g14530
Nbe.v1.1.chr11:91592599-91593039
+
1-deoxy-D-xylulose 5-phosphate reductoisomerase
1-deoxy-D-xylulose 5-phosphate reductoisomerase
Nbe.v1.1.chr15g16060
Nbe.v1.1.chr15g16060.1
Nbe.v1.s00190g16060
Nbe.v1.1.chr15:125991599-125993178
+
aspartate/glutamate/uridylate kinase family protein
aspartate/glutamate/uridylate kinase family protein
Nbe.v1.1.chr15g16070
Nbe.v1.1.chr15g16070.1
Nbe.v1.s00190g16070
Nbe.v1.1.chr15:125989428-125991577
+
Niben101Scf00279g01012.1
Small nuclear ribonucleoprotein family protein
Small nuclear ribonucleoprotein family protein
Nbe.v1.1.chr15g20120
Nbe.v1.1.chr15g20120.1
Nbe.v1.s00190g20120
Nbe.v1.1.chr15:109385196-109385972
-
late embryogenesis abundant protein-related / LEA protein-like protein
late embryogenesis abundant protein-related / LEA protein-related
Nbe.v1.1.chr15g28470
Nbe.v1.1.chr15g28470.1
Nbe.v1.s00190g28470
Nbe.v1.1.chr15:77380811-77384562
-
PIF1 helicase
PIF1 helicase