BLASTN 2.15.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Nbe_v1.1_scf Genome Blast Database
           1,666 sequences; 2,926,155,461 total letters



Query= Nbe.v1.1.chr08g00040

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Nbe.v1.1.chr08                                                        619     3e-175
Nbe.v1.1.chr02                                                        553     3e-155


>Nbe.v1.1.chr08
Length=143789764

 Score = 619 bits (335),  Expect = 3e-175
 Identities = 335/335 (100%), Gaps = 0/335 (0%)
 Strand=Plus/Minus

Query  1       ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107541  ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  107482

Query  61      TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107481  TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  107422

Query  121     CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107421  CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  107362

Query  181     GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107361  GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  107302

Query  241     AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107301  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  107242

Query  301     AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAG  335
               |||||||||||||||||||||||||||||||||||
Sbjct  107241  AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAG  107207


 Score = 119 bits (64),  Expect = 1e-24
 Identities = 64/64 (100%), Gaps = 0/64 (0%)
 Strand=Plus/Minus

Query  333     CAGTGAAACGGGGGATACTGATACTGAAGAGGAGACAAGACATTGTCTATGCACTATTCT  392
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  105508  CAGTGAAACGGGGGATACTGATACTGAAGAGGAGACAAGACATTGTCTATGCACTATTCT  105449

Query  393     TTGA  396
               ||||
Sbjct  105448  TTGA  105445


>Nbe.v1.1.chr02
Length=142998763

 Score = 553 bits (299),  Expect = 3e-155
 Identities = 323/335 (96%), Gaps = 0/335 (0%)
 Strand=Plus/Plus

Query  1         ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  60
                 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  33264252  ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCACTGTCCATTTATTTGC  33264311

Query  61        TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  120
                 |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct  33264312  TTCTGTAAACCCTCTGCCGCTCATCTTTACACTCCAGGTCCATTGAAACTGGAAAGTGGC  33264371

Query  121       CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  180
                 ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  33264372  CCACATGGCACTCCAACACTTGTTTCTGATCAACAATCTGTTGCTGCTGAGGTCAAAGAA  33264431

Query  181       GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  240
                 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  33264432  GAGAGTCCTTTAGATGGAAACCAACTTCCTGAAAATGATCTTAAAAGCTGTATTAGGAAA  33264491

Query  241       AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  33264492  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  33264551

Query  301       AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAG  335
                 ||||||||| ||||||||||||||||||| |||||
Sbjct  33264552  AAAGAACTTGCTGAGATCAAGGAGTTTGAGTCCAG  33264586


 Score = 108 bits (58),  Expect = 3e-21
 Identities = 62/64 (97%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  333       CAGTGAAACGGGGGATACTGATACTGAAGAGGAGACAAGACATTGTCTATGCACTATTCT  392
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct  33266288  CAGTGAAACGGGGGATACTGATACTGAAGAGGATACAAGACATTGTCTATGCATTATTCT  33266347

Query  393       TTGA  396
                 ||||
Sbjct  33266348  TTGA  33266351



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 1073881322949


  Database: Nbe_v1.1_scf Genome Blast Database
    Posted date:  Dec 5, 2024  9:41 AM
  Number of letters in database: 2,926,155,461
  Number of sequences in database:  1,666



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5