BLASTN 2.15.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Nbe_v1.1_scf Genome Blast Database
           1,666 sequences; 2,926,155,461 total letters



Query= Nbe.v1.1.chr08g00010

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Nbe.v1.1.chr08                                                        444     1e-122


>Nbe.v1.1.chr08
Length=143789764

 Score = 444 bits (240),  Expect = 1e-122
 Identities = 240/240 (100%), Gaps = 0/240 (0%)
 Strand=Plus/Minus

Query  1      ATGCTGCCTAATCCCTTATTTCTGGTTCTTGAATTAATAGATGAGCATTTAACCTCACAT  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68477  ATGCTGCCTAATCCCTTATTTCTGGTTCTTGAATTAATAGATGAGCATTTAACCTCACAT  68418

Query  61     GTTTCTGATGCTGTTCAGGAGAGTCCACCTATACCTACCAATGACTTTGCATTGAGTGAT  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68417  GTTTCTGATGCTGTTCAGGAGAGTCCACCTATACCTACCAATGACTTTGCATTGAGTGAT  68358

Query  121    GCTGATTCACCACTAAGTCCTGGGGCAAAATTTGTTATTATTGCATCACAGAATGTGGAC  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68357  GCTGATTCACCACTAAGTCCTGGGGCAAAATTTGTTATTATTGCATCACAGAATGTGGAC  68298

Query  181    ACTCCTCGATCTCCTTCACATGTAGAGGTTGTTCAACCCATTGTAGTCAGAAAATCCTAA  240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68297  ACTCCTCGATCTCCTTCACATGTAGAGGTTGTTCAACCCATTGTAGTCAGAAAATCCTAA  68238


 Score = 185 bits (100),  Expect = 7e-45
 Identities = 132/148 (89%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  90     TATACCTACCAATGACTTTGCATTGAGTGATGCTGATTCACCACTAAGTCCTGGGGCAAA  149
              || ||| |||||| |||||||||| |||||| ||||||||||||||||||||| |||| |
Sbjct  96959  TACACCCACCAATCACTTTGCATTTAGTGATACTGATTCACCACTAAGTCCTGAGGCACA  97018

Query  150    ATTTGTTATTATTGCATCACAGAATGTGGACACTCCTCGATCTCCTTCACATGTAGAGGT  209
               |||| ||||  ||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct  97019  GTTTGATATTCCTGCATCACAAAATGTGGACACTCCTCAATATCCTTCACATGTAGAGGT  97078

Query  210    TGTTCAACCCATTGTAGTCAGAAAATCC  237
              |||||||||||||| | |||||||||||
Sbjct  97079  TGTTCAACCCATTGCAATCAGAAAATCC  97106



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 620335068356


  Database: Nbe_v1.1_scf Genome Blast Database
    Posted date:  Dec 5, 2024  9:41 AM
  Number of letters in database: 2,926,155,461
  Number of sequences in database:  1,666



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5