BLASTN 2.15.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Niben101 cDNA Blast Database
           57,140 sequences; 82,582,885 total letters



Query= Nbe.v1.1.chr08g00040

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben101Scf05216g09026.1                                              654     0.0   
Niben101Scf03323g01002.1                                              621     2e-177


>Niben101Scf05216g09026.1
Length=2824

 Score = 654 bits (354),  Expect = 0.0
 Identities = 382/396 (96%), Gaps = 0/396 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  60
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  337  ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCACTGTCCATTTATTTGC  396

Query  61   TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  120
            |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct  397  TTCTGTAAACCCTCTGCCGCTCATCTTTACACTCCAGGTCCATTGAAACTGGAAAGTGGC  456

Query  121  CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  180
            ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  457  CCACATGGCACTCCAACACTTGTTTCTGATCAACAATCTGTTGCTGCTGAGGTCAAAGAA  516

Query  181  GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  240
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  517  GAGAGTCCTTTAGATGGAAACCAACTTCCTGAAAATGATCTTAAAAGCTGTATTAGGAAA  576

Query  241  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  577  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  636

Query  301  AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAGTGAAACGGGGGATACTGATACTGAA  360
            ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  637  AAAGAACTTGCTGAGATCAAGGAGTTTGAGTCCAGTGAAACGGGGGATACTGATACTGAA  696

Query  361  GAGGAGACAAGACATTGTCTATGCACTATTCTTTGA  396
            ||||| ||||||||||||||||||| ||||||||||
Sbjct  697  GAGGATACAAGACATTGTCTATGCATTATTCTTTGA  732


>Niben101Scf03323g01002.1
Length=3342

 Score = 621 bits (336),  Expect = 2e-177
 Identities = 339/340 (99%), Gaps = 1/340 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  ATGAAGGAAAGCAGTTTGATGAGGGTTTTGTTCTGCAAAATCCATTGCCCATTTATTTGC  173

Query  61   TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  174  TTCTGTAAACCCTCGGCTGCTCATCTTTACACTTCAGGTCCATTGAAACTGGAAAGTGGC  233

Query  121  CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  234  CCACATGTCACTCCAACACTTGTTTCTGATCGACAGTCTGTTGCTGCTGAGGTCAAAGAA  293

Query  181  GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  GAGAGTCCTTTAGATGGAAATCAACTTCCTGAAAATGATCTTAAAAGTTGTATTAGGAAA  353

Query  241  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  AGTCCTAATTCTTCAAAGGAAATTGACAAGAAGAGAGTTCAATGGATGGATAACATAGGG  413

Query  301  AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAGTGAAA  340
            ||||||||||||||||||||||||||||||||||| ||||
Sbjct  414  AAAGAACTTACTGAGATCAAGGAGTTTGAATCCAG-GAAA  452



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 30108276835


  Database: Niben101 cDNA Blast Database
    Posted date:  Dec 5, 2024  9:47 AM
  Number of letters in database: 82,582,885
  Number of sequences in database:  57,140



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5