BLASTN 2.15.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Niben101 cDNA Blast Database 57,140 sequences; 82,582,885 total letters Query= Nbe.v1.1.chr10g15960 Length=915 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf04375g10006.1 1075 0.0 Niben101Scf01594g07002.1 475 5e-133 >Niben101Scf04375g10006.1 Length=1043 Score = 1075 bits (582), Expect = 0.0 Identities = 587/589 (99%), Gaps = 2/589 (0%) Strand=Plus/Plus Query 1 ATGGCAGCAGCAAAACTGAATCCAGAAGCTGAAGAATGGAAACCACCTACCGAGAAAAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 ATGGCAGCAGCAAAACTGAATCCAGAAGCTGAAGAATGGAAACCACCTACCGAGAAAAGT 224 Query 61 CTAATGCATTGTCGTCCTCTTTTACTCCCTCACCAGATTTATCACTCTATACCTCCAGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 CTAATGCATTGTCGTCCTCTTTTACTCCCTCACCAGATTTATCACTCTATACCTCCAGTT 284 Query 121 CCAGTTGGTATACCGACATCACAATCTTTTTCACTGCCTCAAAACTACTTTTTCTTCTAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 CCAGTTGGTATACCGACATCACAATCTTTTTCACTGCCTCAAAACTACTTTTTCTTCTAC 344 Query 181 CAACAACAACAGCAGCAGCAACAACACCAACTTACTCCTCCTCTTGGCGGAGTTCCTTTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 CAACAACAACAGCAGCAGCAACAACACCAACTTACTCCTCCTCTTGGCGGAGTTCCTTTT 404 Query 241 CAATGGATTCATACGTATCATATAGCTTCTGATCAGTCTTGTTTTGCCACAGGGTATGAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 CAATGGATTCATACGTATCATATAGCTTCTGATCAGTCTTGTTTTGCCACAGGGTATGAA 464 Query 301 GTTTTGAATGTTGGGGTGAAAAAAGGGAAACCAGCTTCCGCTTTTTCACGTACTGAAGCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 GTTTTGAATGTTGGGGTGAAAAAAGGGAAACCAGCTTCCGCTTTTTCACGTACTGAAGCT 524 Query 361 GAAAAAAGAGGCCAAAATAAGAAACCCTTTTTGCCGCCTAGGCTGAGAGCTGCTGAAACT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 GAAAAAAGAGGCCAAAATAAGAAACCCTTTTTGCCGCCTAGGCTGAGAGCTGCTGAAACT 584 Query 421 GAAAGAGGACGGCAAAAGCCAAGTTTTGGCATGAAAAAACGCCATAATAATACTGATGGT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 GAAAGAGGACGGCAAAAGCCAAGTTTTGGCATGAAAAAACGCCATAATAATACTGATGGT 644 Query 481 GGTTTCGTATCTTCTTACAAATCTTCAGCTCTTATGGAAAATCCTTCCTTTTCCTGTGAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GGTTTCGTATCTTCTTACAAATCTTCAGCTCTTATGGAAAATCCTTCCTTTTCCTGTGAC 704 Query 541 AAAACCACTGTTATGATCCGTAACATCCCTAATCAGTTTAGGACCGAGA 589 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 705 AAAACCACTGTTATGATCCGTAACATCCCTAATCAGTTTAG--CCGAGA 751 Score = 303 bits (164), Expect = 2e-81 Identities = 164/164 (100%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 581 GGACCGAGAACAATTTGGGCTATGCTTTTGTCAATTTCACAACAGGATGTGCTGCTTCTG 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 GGACCGAGAACAATTTGGGCTATGCTTTTGTCAATTTCACAACAGGATGTGCTGCTTCTG 891 Query 641 GAATTGGGGAAGTACTCAAGAACTTCAAGTGGGAGGGTATTAAGACTCCTGTTAGAATGT 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 GAATTGGGGAAGTACTCAAGAACTTCAAGTGGGAGGGTATTAAGACTCCTGTTAGAATGT 951 Query 701 TTGCCTCGaaaaaaaTCTGTGAAGTTACTTGGGCTCGGATTCAG 744 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 TTGCCTCGAAAAAAATCTGTGAAGTTACTTGGGCTCGGATTCAG 995 >Niben101Scf01594g07002.1 Length=1512 Score = 475 bits (257), Expect = 5e-133 Identities = 309/335 (92%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 581 GGACCGAGAACAATTTGGGCTATGCTTTTGTCAATTTCACAACAGGATGTGCTGCTTCTG 640 ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 765 GGACCGAGAACAATTTGGGCTATGCTTTTGTCAATTTTACAACAATGTTTGCTGCTTCTG 824 Query 641 GAATTGGGGAAGTACTCAAGAACTTCAAGTGGGAGGGTATTAAGACTCCTGTTAGAATGT 700 |||||||| ||||||||||||||||||||||||| ||||||||||| || | |||| | Sbjct 825 GAATTGGGAAAGTACTCAAGAACTTCAAGTGGGATGGTATTAAGACACCCATGGGAATTT 884 Query 701 TTGCCTCGaaaaaaaTCTGTGAAGTTACTTGGGCTCGGATTCAGGGGAAAGAAGAGTTGG 760 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 885 TTGCCTCGAAAAAAATCTGTGAAGTTACTTGGGCCCGGATTCAGGGGAAAGAAGAATTGG 944 Query 761 TGAAGCATTTCTCAACATCAAAATTTATCTGTGACACGAATGAATATCTTCCGGTTGTTT 820 ||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||| Sbjct 945 TGAAGCATTTCTCAACATCGAAATTTATATGCGACACGAATGAATATCTTCCAGTTGTTT 1004 Query 821 TCTCTCCGCCAAGGAATGGCTCAACTAGCTTGGCAAAACCAGTGGCTATTGGCAAACTAG 880 || ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| Sbjct 1005 TCAGTCCGCCAAGGAATGGTTCAACTAGCTTGACAAAACCAGTGGCTATCGGCAAACTAT 1064 Query 881 CTGGTTCTTCAGTTTCTCCCACTCCGTCTGCCTAA 915 ||||||||| ||||||||||||||||||||||||| Sbjct 1065 CTGGTTCTTTAGTTTCTCCCACTCCGTCTGCCTAA 1099 Score = 436 bits (236), Expect = 2e-121 Identities = 270/286 (94%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 1 ATGGCAGCAGCAAAACTGAATCCAGAAGCTGAAGAATGGAAACCACCTACCGAGAAAAGT 60 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 161 ATGGCAGCAGCAAAACTGAATCCAGAAGCTGAAGAATGGAAACCGCCTACTGAGAAAAGT 220 Query 61 CTAATGCATTGTCGTCCTCTTTTACTCCCTCACCAGATTTATCACTCTATACCTCCAGTT 120 || ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 221 CTCATGCATTATCGTCCTCTTTTACTCCCTCACCAGATTTATCACTCTCTACCACCAGTT 280 Query 121 CCAGTTGGTATACCGACATCACAATCTTTTTCACTGCCTCAAAACTACTTTTTCTTCTAC 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 281 CCAGTTGGTATACCGACATCACAATCTTTTTCACTGCCTCAACACTACTTTTTCTTCTAC 340 Query 181 CAACAACAACAGCAGCAGCAACAACACCAACTTACTCCTCCTCTTGGCGGAGTTCCTTTT 240 ||||||||||| || ||||| ||||| ||||||||||||| || ||||||||||||||| Sbjct 341 CAACAACAACAACAACAGCAGCAACAACAACTTACTCCTC-TC--GGCGGAGTTCCTTTT 397 Query 241 CAATGGATTCATACGTATCATATAGCTTCTGATCAGTCTTGT-TTT 285 |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 398 CAATGGATTCATACGTATCATATAGCTTCTGATCAGTCATGTCTTT 443 Score = 281 bits (152), Expect = 1e-74 Identities = 189/207 (91%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 383 AACCCTTTTTGCCGCCTAGGCTGAGAGCTGCTGAAACTGAAAGAGGACGGCAAAAGCCAA 442 |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| Sbjct 480 AACCCTTTTTGCCGCCTAGGCTGAAGGCTGCTGAAACTGAAAGAGGGCGGCAAAGGCCAA 539 Query 443 GTTTTGGCATGAAAAAACGCCATAATAATACTGATGGTGGTTTCGTATCTTCTTACAAAT 502 |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct 540 GTTTTGGCATGAGAAAACGCCATAATAGTACTGTTGGGTGTTTCGTATCTTCTTACAAAT 599 Query 503 CTTCAGCTCTTATGGAAAATCCTTCCTTTTCCTGTGACAAAACCACTGTTATGATCCGTA 562 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 600 CTTCAGCTGCCAAGGAAAATCCTTCCTTTTCCTGTGACAAAACCACTGTTATGATCCGGA 659 Query 563 ACATCCCTAATCAGTTTAGGACCGAGA 589 ||||||| ||||| ||||| |||||| Sbjct 660 ACATCCCGAATCAATTTAG--CCGAGA 684 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72095450805 Database: Niben101 cDNA Blast Database Posted date: Dec 5, 2024 9:47 AM Number of letters in database: 82,582,885 Number of sequences in database: 57,140 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5