BLASTN 2.15.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Niben101 cDNA Blast Database
           57,140 sequences; 82,582,885 total letters



Query= Nbe.v1.1.chr07g16430

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben101Scf04406g01002.1                                              643     0.0   
Niben101Scf08415g01008.1                                              381     4e-105
Niben101Scf05767g01014.1                                              254     8e-67 
Niben101Scf32918g00001.1                                              113     1e-24 


>Niben101Scf04406g01002.1
Length=881

 Score = 643 bits (348),  Expect = 0.0
 Identities = 348/348 (100%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAAATGCTGCGTCTGGAATGGCTATGCTAGACGAGTGCCAACAAGTGGTTGTGGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  112  ATGGCAAATGCTGCGTCTGGAATGGCTATGCTAGACGAGTGCCAACAAGTGGTTGTGGAG  171

Query  61   AAGCTTGGAAATCCTGAGGAAAACTATGAGGATTTCACTAACTCCCTCCCTGCCGATGAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  AAGCTTGGAAATCCTGAGGAAAACTATGAGGATTTCACTAACTCCCTCCCTGCCGATGAG  231

Query  121  TGCCGCTATGCTGTCTTTGATTTCGACTTTATAACTAATGAAAATTGCCAGAAAAGCAAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  TGCCGCTATGCTGTCTTTGATTTCGACTTTATAACTAATGAAAATTGCCAGAAAAGCAAG  291

Query  181  ATTTTCTTTATTGCTTGGTCACCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  ATTTTCTTTATTGCTTGGTCACCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCA  351

Query  241  AGCTCAAAGGATAGATTCAAGAGAGAATTGGATGGAATTCAAGTTGAATTGCAAGCAACG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  AGCTCAAAGGATAGATTCAAGAGAGAATTGGATGGAATTCAAGTTGAATTGCAAGCAACG  411

Query  301  GATCCCAGTGAAATGAGCTTTGACATTATAAAGTCACGAGCACTTTGA  348
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  GATCCCAGTGAAATGAGCTTTGACATTATAAAGTCACGAGCACTTTGA  459


>Niben101Scf08415g01008.1
Length=1890

 Score = 381 bits (206),  Expect = 4e-105
 Identities = 275/309 (89%), Gaps = 2/309 (1%)
 Strand=Plus/Plus

Query  41    GCCAACAAGTGGTTGTGGAGAAGCTTGGAAATCCTGAGGAAAACTATGAGGATTTCACTA  100
             ||||  ||||||| || ||||||||||| |  ||||| |||| |||||| |||||| |||
Sbjct  1343  GCCAGGAAGTGGTGGTAGAGAAGCTTGGCAGCCCTGAAGAAAGCTATGAAGATTTCTCTA  1402

Query  101   ACTCCCTCCCTGCCGATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTTATAACTAATG  160
             |||| || ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct  1403  ACTCTCTGCCTGCAGATGAATGTCGCTATGCTGTCTTTGATTTAGACTTCATAACTAATG  1462

Query  161   AAAATTGCCAGAAAAGCAAGATTTTCTTTATTGCTTGGTCACCTGACACATCAAAGGTGA  220
             |||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||
Sbjct  1463  AAAATTGCCAGAAAAGCAAGATTTTCTTCATTGCTTGGTCACCAGAAACATCAAGGGTGA  1522

Query  221   GGATGAAGATGGTTTACGCAAGCTCAAAGGATAGATTCAAGAGAGAATTGGATGGAATTC  280
             ||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct  1523  GGATGAAGATGGTGTACGCGAGCTCAAAGGATAGATTCAAGAGAGAACTGGACGGAATTC  1582

Query  281   AAGTTGAATTGCAAGCAACGGATCCCAGTGAAATGAGCTTTGACATTATAAAGTCACGAG  340
             ||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||
Sbjct  1583  AAGTTGAGTTGCAAGCAACAGATCCTAGTGAAATGAGCTTTGACATTGTAAAAGCACGAG  1642

Query  341   CACT-TTGA  348
             | || ||||
Sbjct  1643  C-CTATTGA  1650


>Niben101Scf05767g01014.1
Length=2590

 Score = 254 bits (137),  Expect = 8e-67
 Identities = 147/152 (97%), Gaps = 0/152 (0%)
 Strand=Plus/Plus

Query  197   GGTCACCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCAAGCTCAAAGGATAGAT  256
             |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  922   GGTCTCCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCGAGTTCAAAGGATAGAT  981

Query  257   TCAAGAGAGAATTGGATGGAATTCAAGTTGAATTGCAAGCAACGGATCCCAGTGAAATGA  316
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  982   TCAAGAGAGAACTGGATGGAATTCAAGTTGAATTGCAAGCAACGGATCCCAGTGAGATGA  1041

Query  317   GCTTTGACATTATAAAGTCACGAGCACTTTGA  348
             ||||||||||||||||||||||||||||||||
Sbjct  1042  GCTTTGACATTATAAAGTCACGAGCACTTTGA  1073


 Score = 233 bits (126),  Expect = 1e-60
 Identities = 151/163 (93%), Gaps = 1/163 (1%)
 Strand=Plus/Plus

Query  41   GCCAACAAGTGGTTGTGGAGAAGCTTGGAAATCCTGAGGAAAACTATGAGGATTTCACTA  100
            ||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| |
Sbjct  534  GCCAACAAGTGGTTGTGGAGAAGCTGGGTAATCCTGAAGAAAACTATGACGACTTCACCA  593

Query  101  ACTCCCTCCCTGCCGATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTTATAACTAATG  160
            |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  594  ACTCTCTGCCTGCCGATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTCATAACTACTG  653

Query  161  AAAATTGCCAGAAAAGCAAGATTTTCTTTATTGCTTGGTCACC  203
            |||||||||||||||||||||||||||| |||||||||| |||
Sbjct  654  AAAATTGCCAGAAAAGCAAGATTTTCTTCATTGCTTGGT-ACC  695


>Niben101Scf32918g00001.1
Length=246

 Score = 113 bits (61),  Expect = 1e-24
 Identities = 67/70 (96%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  127  TATGCTGTCTTTGATTTCGACTTTATAACTAATGAAAATTGCCAGAAAAGCAAGATTTTC  186
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    TATGCTGTCTTTGATTTAGACTTCATAACTAATGAAAATTGCCAGAAAAGCAAGATTTTC  60

Query  187  TTTATTGCTT  196
            || |||||||
Sbjct  61   TTCATTGCTT  70



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 26212866355


  Database: Niben101 cDNA Blast Database
    Posted date:  Dec 5, 2024  9:47 AM
  Number of letters in database: 82,582,885
  Number of sequences in database:  57,140



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5