BLASTN 2.15.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Niben101 cDNA Blast Database 57,140 sequences; 82,582,885 total letters Query= Nbe.v1.1.chr17g29780 Length=414 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf08415g01008.1 496 2e-139 Niben101Scf05767g01014.1 490 7e-138 Niben101Scf04406g01002.1 481 4e-135 Niben101Scf08415g01005.1 193 2e-48 Niben101Scf32918g00001.1 122 3e-27 >Niben101Scf08415g01008.1 Length=1890 Score = 496 bits (268), Expect = 2e-139 Identities = 365/413 (88%), Gaps = 2/413 (0%) Strand=Plus/Plus Query 3 GGCAAATGCTGCGTCTGGAATGGCTGTGCTAGACGAGTGTAAGCTGAAGTTCTTGGAATT 62 ||| ||||||| ||||||||||| || | ||| || |||||||| || ||||||||||| Sbjct 1239 GGCGAATGCTGTTTCTGGAATGGCAGTACAAGATGAATGTAAGCTAAAATTCTTGGAATT 1298 Query 63 AAAAGCAAAGAGAAACTACAGGTTCATAGTATTCAAGATTGAAGGCCAACAAGTGGTTGT 122 ||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||| || Sbjct 1299 AAAAGCAAAGAGAAACTACAGGTTCATTATTTTCAAGATTGATGGCCAGGAAGTGGTGGT 1358 Query 123 GGAGAAGCTGGGTAATCCTGAAGAAAACTATGACGACTTCACCAACTCTCTGCCTGCCGA 182 |||||||| || | |||||||||| |||||| || ||| | |||||||||||||| || Sbjct 1359 AGAGAAGCTTGGCAGCCCTGAAGAAAGCTATGAAGATTTCTCTAACTCTCTGCCTGCAGA 1418 Query 183 TGAGTGCCGCTATGCTGTCTTTGATTTCGACTTCATAACTACTGAAAATTGCCAGAAAAG 242 ||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1419 TGAATGTCGCTATGCTGTCTTTGATTTAGACTTCATAACTAATGAAAATTGCCAGAAAAG 1478 Query 243 CAAGATTTTCTTCATTGCTTGGTCTCCTGACACATCAAAGGTGAGGATGAAGATGGTTTA 302 |||||||||||||||||||||||| || || ||||||| |||||||||||||||||| || Sbjct 1479 CAAGATTTTCTTCATTGCTTGGTCACCAGAAACATCAAGGGTGAGGATGAAGATGGTGTA 1538 Query 303 CGCGAGTTCAAAGGATAGATTCAAGAGAGAACTGGATGGAATTCAAGTTGAATTGCAAGC 362 |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1539 CGCGAGCTCAAAGGATAGATTCAAGAGAGAACTGGACGGAATTCAAGTTGAGTTGCAAGC 1598 Query 363 AACGGATCCCAGTGAGATGAGCTTTGACATTATAAAGTCACGAGCACT-TTGA 414 ||| ||||| ||||| ||||||||||||||| |||| ||||||| || |||| Sbjct 1599 AACAGATCCTAGTGAAATGAGCTTTGACATTGTAAAAGCACGAGC-CTATTGA 1650 >Niben101Scf05767g01014.1 Length=2590 Score = 490 bits (265), Expect = 7e-138 Identities = 265/265 (100%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 1 ATGGCAAATGCTGCGTCTGGAATGGCTGTGCTAGACGAGTGTAAGCTGAAGTTCTTGGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 ATGGCAAATGCTGCGTCTGGAATGGCTGTGCTAGACGAGTGTAAGCTGAAGTTCTTGGAA 487 Query 61 TTAAAAGCAAAGAGAAACTACAGGTTCATAGTATTCAAGATTGAAGGCCAACAAGTGGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TTAAAAGCAAAGAGAAACTACAGGTTCATAGTATTCAAGATTGAAGGCCAACAAGTGGTT 547 Query 121 GTGGAGAAGCTGGGTAATCCTGAAGAAAACTATGACGACTTCACCAACTCTCTGCCTGCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 GTGGAGAAGCTGGGTAATCCTGAAGAAAACTATGACGACTTCACCAACTCTCTGCCTGCC 607 Query 181 GATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTCATAACTACTGAAAATTGCCAGAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 GATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTCATAACTACTGAAAATTGCCAGAAA 667 Query 241 AGCAAGATTTTCTTCATTGCTTGGT 265 ||||||||||||||||||||||||| Sbjct 668 AGCAAGATTTTCTTCATTGCTTGGT 692 Score = 281 bits (152), Expect = 5e-75 Identities = 152/152 (100%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 263 GGTCTCCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCGAGTTCAAAGGATAGAT 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 922 GGTCTCCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCGAGTTCAAAGGATAGAT 981 Query 323 TCAAGAGAGAACTGGATGGAATTCAAGTTGAATTGCAAGCAACGGATCCCAGTGAGATGA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 982 TCAAGAGAGAACTGGATGGAATTCAAGTTGAATTGCAAGCAACGGATCCCAGTGAGATGA 1041 Query 383 GCTTTGACATTATAAAGTCACGAGCACTTTGA 414 |||||||||||||||||||||||||||||||| Sbjct 1042 GCTTTGACATTATAAAGTCACGAGCACTTTGA 1073 >Niben101Scf04406g01002.1 Length=881 Score = 481 bits (260), Expect = 4e-135 Identities = 292/308 (95%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 107 GCCAACAAGTGGTTGTGGAGAAGCTGGGTAATCCTGAAGAAAACTATGACGACTTCACCA 166 ||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| | Sbjct 152 GCCAACAAGTGGTTGTGGAGAAGCTTGGAAATCCTGAGGAAAACTATGAGGATTTCACTA 211 Query 167 ACTCTCTGCCTGCCGATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTCATAACTACTG 226 |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 212 ACTCCCTCCCTGCCGATGAGTGCCGCTATGCTGTCTTTGATTTCGACTTTATAACTAATG 271 Query 227 AAAATTGCCAGAAAAGCAAGATTTTCTTCATTGCTTGGTCTCCTGACACATCAAAGGTGA 286 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 272 AAAATTGCCAGAAAAGCAAGATTTTCTTTATTGCTTGGTCACCTGACACATCAAAGGTGA 331 Query 287 GGATGAAGATGGTTTACGCGAGTTCAAAGGATAGATTCAAGAGAGAACTGGATGGAATTC 346 ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 332 GGATGAAGATGGTTTACGCAAGCTCAAAGGATAGATTCAAGAGAGAATTGGATGGAATTC 391 Query 347 AAGTTGAATTGCAAGCAACGGATCCCAGTGAGATGAGCTTTGACATTATAAAGTCACGAG 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 392 AAGTTGAATTGCAAGCAACGGATCCCAGTGAAATGAGCTTTGACATTATAAAGTCACGAG 451 Query 407 CACTTTGA 414 |||||||| Sbjct 452 CACTTTGA 459 >Niben101Scf08415g01005.1 Length=3657 Score = 193 bits (104), Expect = 2e-48 Identities = 137/153 (90%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 263 GGTCTCCTGACACATCAAAGGTGAGGATGAAGATGGTTTACGCGAGTTCAAAGGATAGAT 322 |||| || || ||||||| |||||||||||||||||| |||||||| ||||||||||||| Sbjct 3438 GGTCACCAGAAACATCAAGGGTGAGGATGAAGATGGTGTACGCGAGCTCAAAGGATAGAT 3379 Query 323 TCAAGAGAGAACTGGATGGAATTCAAGTTGAATTGCAAGCAACGGATCCCAGTGAGATGA 382 |||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||| Sbjct 3378 TCAAGAGAGAACTGGACGGAATTCAAGTTGAGTTGCAAGCAACAGATCCTAGTGAAATGA 3319 Query 383 GCTTTGACATTATAAAGTCACGAGCACT-TTGA 414 ||||||||||| |||| ||||||| || |||| Sbjct 3318 GCTTTGACATTGTAAAAGCACGAGC-CTATTGA 3287 >Niben101Scf32918g00001.1 Length=246 Score = 122 bits (66), Expect = 3e-27 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 193 TATGCTGTCTTTGATTTCGACTTCATAACTACTGAAAATTGCCAGAAAAGCAAGATTTTC 252 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 TATGCTGTCTTTGATTTAGACTTCATAACTAATGAAAATTGCCAGAAAAGCAAGATTTTC 60 Query 253 TTCATTGCTTGGTCTCCT 270 |||||||||| || |||| Sbjct 61 TTCATTGCTTTGTATCCT 78 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31569055765 Database: Niben101 cDNA Blast Database Posted date: Dec 5, 2024 9:47 AM Number of letters in database: 82,582,885 Number of sequences in database: 57,140 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5